Result of FASTA (omim) for
pF1KB6892
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6892, 202 aa
1>>>pF1KB6892 202 - 202 aa - 202 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.4538+/-0.000329; mu= -8.3314+/- 0.021
mean_var=335.4084+/-68.621, 0's: 0 Z-trim(126.1): 27 B-trim: 1650 in 1/58
Lambda= 0.070031
statistics sampled from 51337 (51369) to 51337 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.857), E-opt: 0.2 (0.602), width: 16
Scan time: 7.770
The best scores are: opt bits E(85289)
NP_000942 (OMIM: 604429) transmembrane gamma-carbo ( 202) 1441 157.7 1.2e-38
XP_006723349 (OMIM: 604429) PREDICTED: transmembra ( 202) 1441 157.7 1.2e-38
XP_011525426 (OMIM: 604429) PREDICTED: transmembra ( 179) 1256 139.0 4.5e-33
NP_001303264 (OMIM: 604429) transmembrane gamma-ca ( 179) 1256 139.0 4.5e-33
NP_076986 (OMIM: 611690) transmembrane gamma-carbo ( 226) 299 42.4 0.00069
XP_006718377 (OMIM: 611690) PREDICTED: transmembra ( 226) 299 42.4 0.00069
XP_016873764 (OMIM: 611690) PREDICTED: transmembra ( 364) 299 42.6 0.00097
>>NP_000942 (OMIM: 604429) transmembrane gamma-carboxygl (202 aa)
initn: 1441 init1: 1441 opt: 1441 Z-score: 815.0 bits: 157.7 E(85289): 1.2e-38
Smith-Waterman score: 1441; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202)
10 20 30 40 50 60
pF1KB6 MRGHPSLLLLYMALTTCLDTSPSEETDQEVFLGPPEAQSFLSSHTRIPRANHWDLELLTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MRGHPSLLLLYMALTTCLDTSPSEETDQEVFLGPPEAQSFLSSHTRIPRANHWDLELLTP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GNLERECLEERCSWEEAREYFEDNTLTERFWESYIYNGKGGRGRVDVASLAVGLTGGILL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GNLERECLEERCSWEEAREYFEDNTLTERFWESYIYNGKGGRGRVDVASLAVGLTGGILL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 IVLAGLGAFWYLRWRQHRGQQPCPQEAGLISPLSPLNPLGPPTPLPPPPPPPPGLPTYEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 IVLAGLGAFWYLRWRQHRGQQPCPQEAGLISPLSPLNPLGPPTPLPPPPPPPPGLPTYEQ
130 140 150 160 170 180
190 200
pF1KB6 ALAASGVHDAPPPPYTSLRRPH
::::::::::::::::::::::
NP_000 ALAASGVHDAPPPPYTSLRRPH
190 200
>>XP_006723349 (OMIM: 604429) PREDICTED: transmembrane g (202 aa)
initn: 1441 init1: 1441 opt: 1441 Z-score: 815.0 bits: 157.7 E(85289): 1.2e-38
Smith-Waterman score: 1441; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202)
10 20 30 40 50 60
pF1KB6 MRGHPSLLLLYMALTTCLDTSPSEETDQEVFLGPPEAQSFLSSHTRIPRANHWDLELLTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MRGHPSLLLLYMALTTCLDTSPSEETDQEVFLGPPEAQSFLSSHTRIPRANHWDLELLTP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GNLERECLEERCSWEEAREYFEDNTLTERFWESYIYNGKGGRGRVDVASLAVGLTGGILL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GNLERECLEERCSWEEAREYFEDNTLTERFWESYIYNGKGGRGRVDVASLAVGLTGGILL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 IVLAGLGAFWYLRWRQHRGQQPCPQEAGLISPLSPLNPLGPPTPLPPPPPPPPGLPTYEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IVLAGLGAFWYLRWRQHRGQQPCPQEAGLISPLSPLNPLGPPTPLPPPPPPPPGLPTYEQ
130 140 150 160 170 180
190 200
pF1KB6 ALAASGVHDAPPPPYTSLRRPH
::::::::::::::::::::::
XP_006 ALAASGVHDAPPPPYTSLRRPH
190 200
>>XP_011525426 (OMIM: 604429) PREDICTED: transmembrane g (179 aa)
initn: 1256 init1: 1256 opt: 1256 Z-score: 714.7 bits: 139.0 E(85289): 4.5e-33
Smith-Waterman score: 1256; 100.0% identity (100.0% similar) in 174 aa overlap (29-202:6-179)
10 20 30 40 50 60
pF1KB6 MRGHPSLLLLYMALTTCLDTSPSEETDQEVFLGPPEAQSFLSSHTRIPRANHWDLELLTP
::::::::::::::::::::::::::::::::
XP_011 MSLGPEVFLGPPEAQSFLSSHTRIPRANHWDLELLTP
10 20 30
70 80 90 100 110 120
pF1KB6 GNLERECLEERCSWEEAREYFEDNTLTERFWESYIYNGKGGRGRVDVASLAVGLTGGILL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GNLERECLEERCSWEEAREYFEDNTLTERFWESYIYNGKGGRGRVDVASLAVGLTGGILL
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 IVLAGLGAFWYLRWRQHRGQQPCPQEAGLISPLSPLNPLGPPTPLPPPPPPPPGLPTYEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IVLAGLGAFWYLRWRQHRGQQPCPQEAGLISPLSPLNPLGPPTPLPPPPPPPPGLPTYEQ
100 110 120 130 140 150
190 200
pF1KB6 ALAASGVHDAPPPPYTSLRRPH
::::::::::::::::::::::
XP_011 ALAASGVHDAPPPPYTSLRRPH
160 170
>>NP_001303264 (OMIM: 604429) transmembrane gamma-carbox (179 aa)
initn: 1256 init1: 1256 opt: 1256 Z-score: 714.7 bits: 139.0 E(85289): 4.5e-33
Smith-Waterman score: 1256; 100.0% identity (100.0% similar) in 174 aa overlap (29-202:6-179)
10 20 30 40 50 60
pF1KB6 MRGHPSLLLLYMALTTCLDTSPSEETDQEVFLGPPEAQSFLSSHTRIPRANHWDLELLTP
::::::::::::::::::::::::::::::::
NP_001 MSLGPEVFLGPPEAQSFLSSHTRIPRANHWDLELLTP
10 20 30
70 80 90 100 110 120
pF1KB6 GNLERECLEERCSWEEAREYFEDNTLTERFWESYIYNGKGGRGRVDVASLAVGLTGGILL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GNLERECLEERCSWEEAREYFEDNTLTERFWESYIYNGKGGRGRVDVASLAVGLTGGILL
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 IVLAGLGAFWYLRWRQHRGQQPCPQEAGLISPLSPLNPLGPPTPLPPPPPPPPGLPTYEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVLAGLGAFWYLRWRQHRGQQPCPQEAGLISPLSPLNPLGPPTPLPPPPPPPPGLPTYEQ
100 110 120 130 140 150
190 200
pF1KB6 ALAASGVHDAPPPPYTSLRRPH
::::::::::::::::::::::
NP_001 ALAASGVHDAPPPPYTSLRRPH
160 170
>>NP_076986 (OMIM: 611690) transmembrane gamma-carboxygl (226 aa)
initn: 310 init1: 193 opt: 299 Z-score: 190.8 bits: 42.4 E(85289): 0.00069
Smith-Waterman score: 380; 40.5% identity (63.8% similar) in 185 aa overlap (23-195:28-207)
10 20 30 40 50
pF1KB6 MRGHPSLLLLYMALTTCLDTSPSEETDQEVFLGPPEAQSFLSSHTRIPRANHWDL
:... .::: . ::. :. : :. :..::
NP_076 MFTLLVLLSQLPTVTLGFPHCARGPKASKHAGEEVFTSKEEANFFI--HRRL-LYNRFDL
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 ELLTPGNLERECLEERCSWEEAREYFEDNTLTERFWESYIYNGK-----GGRGRVDVASL
::.::::::::: :: :..::::: : :. : ::. : .: :.: ..:: .:
NP_076 ELFTPGNLERECNEELCNYEEAREIFVDEDKTIAFWQEYSAKGPTTKSDGNREKIDVMGL
60 70 80 90 100 110
120 130 140 150 160
pF1KB6 AVGL-TGGILLIVLAGLGAFWYLRWRQHRGQQPCPQ---EAGLISPLSPLNPLGPPTPLP
.:: ..:..:.... :: . . . .: :.:: . : : .: : . . :
NP_076 LTGLIAAGVFLVIFGLLGYYLCIT-KCNRLQHPCSSAVYERGRHTP-SIIFRRPEEAALS
120 130 140 150 160 170
170 180 190 200
pF1KB6 PPPPP--PPGLPTYEQALAASGVHD-APPPPYTSLRRPH
: :: :::.::::.: . :. .:::::
NP_076 PLPPSVEDAGLPSYEQAVALTRKHSVSPPPPYPGHTKGFRVFKKSMSLPSH
180 190 200 210 220
>>XP_006718377 (OMIM: 611690) PREDICTED: transmembrane g (226 aa)
initn: 310 init1: 193 opt: 299 Z-score: 190.8 bits: 42.4 E(85289): 0.00069
Smith-Waterman score: 380; 40.5% identity (63.8% similar) in 185 aa overlap (23-195:28-207)
10 20 30 40 50
pF1KB6 MRGHPSLLLLYMALTTCLDTSPSEETDQEVFLGPPEAQSFLSSHTRIPRANHWDL
:... .::: . ::. :. : :. :..::
XP_006 MFTLLVLLSQLPTVTLGFPHCARGPKASKHAGEEVFTSKEEANFFI--HRRL-LYNRFDL
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 ELLTPGNLERECLEERCSWEEAREYFEDNTLTERFWESYIYNGK-----GGRGRVDVASL
::.::::::::: :: :..::::: : :. : ::. : .: :.: ..:: .:
XP_006 ELFTPGNLERECNEELCNYEEAREIFVDEDKTIAFWQEYSAKGPTTKSDGNREKIDVMGL
60 70 80 90 100 110
120 130 140 150 160
pF1KB6 AVGL-TGGILLIVLAGLGAFWYLRWRQHRGQQPCPQ---EAGLISPLSPLNPLGPPTPLP
.:: ..:..:.... :: . . . .: :.:: . : : .: : . . :
XP_006 LTGLIAAGVFLVIFGLLGYYLCIT-KCNRLQHPCSSAVYERGRHTP-SIIFRRPEEAALS
120 130 140 150 160 170
170 180 190 200
pF1KB6 PPPPP--PPGLPTYEQALAASGVHD-APPPPYTSLRRPH
: :: :::.::::.: . :. .:::::
XP_006 PLPPSVEDAGLPSYEQAVALTRKHSVSPPPPYPGHTKGFRVFKKSMSLPSH
180 190 200 210 220
>>XP_016873764 (OMIM: 611690) PREDICTED: transmembrane g (364 aa)
initn: 310 init1: 193 opt: 299 Z-score: 188.1 bits: 42.6 E(85289): 0.00097
Smith-Waterman score: 380; 40.5% identity (63.8% similar) in 185 aa overlap (23-195:166-345)
10 20 30 40 50
pF1KB6 MRGHPSLLLLYMALTTCLDTSPSEETDQEVFLGPPEAQSFLSSHTRIPRANH
:... .::: . ::. :. : :. :.
XP_016 CQTMFTLLVLLSQLPTVTLGFPHCARGPKASKHAGEEVFTSKEEANFFI--HRRL-LYNR
140 150 160 170 180 190
60 70 80 90 100
pF1KB6 WDLELLTPGNLERECLEERCSWEEAREYFEDNTLTERFWESYIYNGK-----GGRGRVDV
.::::.::::::::: :: :..::::: : :. : ::. : .: :.: ..::
XP_016 FDLELFTPGNLERECNEELCNYEEAREIFVDEDKTIAFWQEYSAKGPTTKSDGNREKIDV
200 210 220 230 240 250
110 120 130 140 150 160
pF1KB6 ASLAVGL-TGGILLIVLAGLGAFWYLRWRQHRGQQPCPQ---EAGLISPLSPLNPLGPPT
.: .:: ..:..:.... :: . . . .: :.:: . : : .: : . .
XP_016 MGLLTGLIAAGVFLVIFGLLGYYLCIT-KCNRLQHPCSSAVYERGRHTP-SIIFRRPEEA
260 270 280 290 300 310
170 180 190 200
pF1KB6 PLPPPPPP--PPGLPTYEQALAASGVHD-APPPPYTSLRRPH
: : :: :::.::::.: . :. .:::::
XP_016 ALSPLPPSVEDAGLPSYEQAVALTRKHSVSPPPPYPGHTKGFRVFKKSMSLPSH
320 330 340 350 360
202 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 14:08:24 2016 done: Sat Nov 5 14:08:25 2016
Total Scan time: 7.770 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]