FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6887, 183 aa
  1>>>pF1KB6887 183 - 183 aa - 183 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0136+/-0.000649; mu= 11.9601+/- 0.039
 mean_var=115.1638+/-22.154, 0's: 0 Z-trim(115.3): 8  B-trim: 10 in 1/51
 Lambda= 0.119513
 statistics sampled from 15893 (15901) to 15893 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.827), E-opt: 0.2 (0.488), width:  16
 Scan time:  2.210

The best scores are:                                      opt bits E(32554)
CCDS174.1 MFAP2 gene_id:4237|Hs108|chr1            ( 183) 1313 235.8 1.1e-62
CCDS44071.1 MFAP2 gene_id:4237|Hs108|chr1          ( 182) 1296 232.9 8.5e-62


>>CCDS174.1 MFAP2 gene_id:4237|Hs108|chr1                 (183 aa)
 initn: 1313 init1: 1313 opt: 1313  Z-score: 1238.8  bits: 235.8 E(32554): 1.1e-62
Smith-Waterman score: 1313; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:1-183)

               10        20        30        40        50        60
pF1KB6 MRAAYLFLLFLPAGLLAQGQYDLDPLPPFPDHVQYTHYSDQIDNPDYYDYQEVTPRPSEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MRAAYLFLLFLPAGLLAQGQYDLDPLPPFPDHVQYTHYSDQIDNPDYYDYQEVTPRPSEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QFQFQSQQQVQQEVIPAPTPEPGNAELEPTEPGPLDCREEQYPCTRLYSIHRPCKQCLNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 QFQFQSQQQVQQEVIPAPTPEPGNAELEPTEPGPLDCREEQYPCTRLYSIHRPCKQCLNE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 VCFYSLRRVYVINKEICVRTVCAHEELLRADLCRDKFSKCGVMASSGLCQSVAASCARSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 VCFYSLRRVYVINKEICVRTVCAHEELLRADLCRDKFSKCGVMASSGLCQSVAASCARSC
              130       140       150       160       170       180

          
pF1KB6 GSC
       :::
CCDS17 GSC
          

>>CCDS44071.1 MFAP2 gene_id:4237|Hs108|chr1               (182 aa)
 initn: 1230 init1: 1230 opt: 1296  Z-score: 1222.9  bits: 232.9 E(32554): 8.5e-62
Smith-Waterman score: 1296; 99.5% identity (99.5% similar) in 183 aa overlap (1-183:1-182)

               10        20        30        40        50        60
pF1KB6 MRAAYLFLLFLPAGLLAQGQYDLDPLPPFPDHVQYTHYSDQIDNPDYYDYQEVTPRPSEE
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MRAAYLFLLFLP-GLLAQGQYDLDPLPPFPDHVQYTHYSDQIDNPDYYDYQEVTPRPSEE
               10         20        30        40        50         

               70        80        90       100       110       120
pF1KB6 QFQFQSQQQVQQEVIPAPTPEPGNAELEPTEPGPLDCREEQYPCTRLYSIHRPCKQCLNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QFQFQSQQQVQQEVIPAPTPEPGNAELEPTEPGPLDCREEQYPCTRLYSIHRPCKQCLNE
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB6 VCFYSLRRVYVINKEICVRTVCAHEELLRADLCRDKFSKCGVMASSGLCQSVAASCARSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VCFYSLRRVYVINKEICVRTVCAHEELLRADLCRDKFSKCGVMASSGLCQSVAASCARSC
     120       130       140       150       160       170         

          
pF1KB6 GSC
       :::
CCDS44 GSC
     180  




183 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:12:21 2016 done: Sat Nov  5 00:12:22 2016
 Total Scan time:  2.210 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]