FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6878, 200 aa
  1>>>pF1KB6878 200 - 200 aa - 200 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3620+/-0.000672; mu= 9.8252+/- 0.041
 mean_var=91.3740+/-18.376, 0's: 0 Z-trim(112.1): 11  B-trim: 0 in 0/54
 Lambda= 0.134172
 statistics sampled from 12950 (12956) to 12950 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.398), width:  16
 Scan time:  1.930

The best scores are:                                      opt bits E(32554)
CCDS6963.1 MED22 gene_id:6837|Hs108|chr9           ( 200) 1291 258.9 1.5e-69
CCDS6964.1 MED22 gene_id:6837|Hs108|chr9           ( 140)  859 175.2 1.6e-44


>>CCDS6963.1 MED22 gene_id:6837|Hs108|chr9                (200 aa)
 initn: 1291 init1: 1291 opt: 1291  Z-score: 1362.2  bits: 258.9 E(32554): 1.5e-69
Smith-Waterman score: 1291; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200)

               10        20        30        40        50        60
pF1KB6 MAQQRALPQSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MAQQRALPQSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 MHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRTLQEECDRKLITLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRTLQEECDRKLITLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 DEISIDLYELEEEYYSSSSSLCEANDLPLCEAYGRLDLDTDSADGLSAPLLASPEPSAGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 DEISIDLYELEEEYYSSSSSLCEANDLPLCEAYGRLDLDTDSADGLSAPLLASPEPSAGP
              130       140       150       160       170       180

              190       200
pF1KB6 LQVAAPAHSHAGGPGPTEHA
       ::::::::::::::::::::
CCDS69 LQVAAPAHSHAGGPGPTEHA
              190       200

>>CCDS6964.1 MED22 gene_id:6837|Hs108|chr9                (140 aa)
 initn: 859 init1: 859 opt: 859  Z-score: 912.6  bits: 175.2 E(32554): 1.6e-44
Smith-Waterman score: 859; 100.0% identity (100.0% similar) in 137 aa overlap (1-137:1-137)

               10        20        30        40        50        60
pF1KB6 MAQQRALPQSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MAQQRALPQSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 MHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRTLQEECDRKLITLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRTLQEECDRKLITLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 DEISIDLYELEEEYYSSSSSLCEANDLPLCEAYGRLDLDTDSADGLSAPLLASPEPSAGP
       :::::::::::::::::                                           
CCDS69 DEISIDLYELEEEYYSSRYK                                        
              130       140                                        




200 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:18:50 2016 done: Sat Nov  5 00:18:51 2016
 Total Scan time:  1.930 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]