Result of FASTA (ccds) for
pF1KB6872
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6872, 198 aa
1>>>pF1KB6872 198 - 198 aa - 198 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7430+/-0.00109; mu= 16.3655+/- 0.067
mean_var=74.5510+/-15.977, 0's: 0 Z-trim(104.5): 129 B-trim: 557 in 2/48
Lambda= 0.148541
statistics sampled from 7760 (7924) to 7760 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.621), E-opt: 0.2 (0.243), width: 16
Scan time: 1.590
The best scores are: opt bits E(32554)
CCDS7298.1 SAR1A gene_id:56681|Hs108|chr10 ( 198) 1306 289.1 1.2e-78
CCDS4177.1 SAR1B gene_id:51128|Hs108|chr5 ( 198) 1215 269.6 8.7e-73
CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 ( 175) 316 76.9 7.9e-15
CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5 ( 569) 308 75.7 6e-14
CCDS9419.1 ARL11 gene_id:115761|Hs108|chr13 ( 196) 302 74.0 6.9e-14
CCDS8088.1 ARL2 gene_id:402|Hs108|chr11 ( 184) 298 73.1 1.2e-13
CCDS2928.1 ARL6 gene_id:84100|Hs108|chr3 ( 186) 297 72.9 1.4e-13
CCDS3986.1 TRIM23 gene_id:373|Hs108|chr5 ( 546) 302 74.4 1.4e-13
CCDS3192.1 ARL14 gene_id:80117|Hs108|chr3 ( 192) 297 72.9 1.4e-13
CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5 ( 574) 302 74.4 1.5e-13
CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 ( 181) 295 72.4 1.8e-13
CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 ( 181) 294 72.2 2.1e-13
CCDS11463.1 ARL4D gene_id:379|Hs108|chr17 ( 201) 291 71.6 3.6e-13
CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 ( 180) 282 69.6 1.3e-12
CCDS7538.1 ARL3 gene_id:403|Hs108|chr10 ( 182) 281 69.4 1.5e-12
CCDS5359.1 ARL4A gene_id:10124|Hs108|chr7 ( 200) 276 68.4 3.3e-12
CCDS2566.1 ARL8B gene_id:55207|Hs108|chr3 ( 186) 269 66.9 8.9e-12
CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 ( 180) 268 66.6 1e-11
CCDS1421.1 ARL8A gene_id:127829|Hs108|chr1 ( 186) 267 66.4 1.2e-11
CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 ( 181) 266 66.2 1.4e-11
CCDS2925.1 ARL13B gene_id:200894|Hs108|chr3 ( 428) 262 65.7 4.5e-11
CCDS2512.1 ARL4C gene_id:10123|Hs108|chr2 ( 192) 256 64.1 6.3e-11
CCDS63169.1 ARL4C gene_id:10123|Hs108|chr2 ( 201) 256 64.1 6.5e-11
>>CCDS7298.1 SAR1A gene_id:56681|Hs108|chr10 (198 aa)
initn: 1306 init1: 1306 opt: 1306 Z-score: 1525.6 bits: 289.1 E(32554): 1.2e-78
Smith-Waterman score: 1306; 100.0% identity (100.0% similar) in 198 aa overlap (1-198:1-198)
10 20 30 40 50 60
pF1KB6 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 SEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 SEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 DETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 DETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSV
130 140 150 160 170 180
190
pF1KB6 LKRQGYGEGFRWLSQYID
::::::::::::::::::
CCDS72 LKRQGYGEGFRWLSQYID
190
>>CCDS4177.1 SAR1B gene_id:51128|Hs108|chr5 (198 aa)
initn: 1215 init1: 1215 opt: 1215 Z-score: 1420.2 bits: 269.6 E(32554): 8.7e-73
Smith-Waterman score: 1215; 89.9% identity (98.0% similar) in 198 aa overlap (1-198:1-198)
10 20 30 40 50 60
pF1KB6 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
:::::.:::.::::::::::::::.:::::::::::::::::::::::::::::::::::
CCDS41 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 SEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMT
::::::::::::::::::: ::::::::::::::::::::::::: ::.::: ::..:::
CCDS41 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 DETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSV
::::.::::::::::::: .:::::.:::.:::::::::::...::::::::.:::::::
CCDS41 DETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCSV
130 140 150 160 170 180
190
pF1KB6 LKRQGYGEGFRWLSQYID
::::::::::::..::::
CCDS41 LKRQGYGEGFRWMAQYID
190
>>CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 (175 aa)
initn: 336 init1: 314 opt: 316 Z-score: 379.7 bits: 76.9 E(32554): 7.9e-15
Smith-Waterman score: 317; 33.3% identity (67.2% similar) in 174 aa overlap (24-194:12-170)
10 20 30 40 50
pF1KB6 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHV---PTL
: ....:::: :::::.:. :: ::: : ::.
CCDS96 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLK---LGQSVTTIPTV
10 20 30 40
60 70 80 90 100 110
pF1KB6 HPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNA
. : .: .. :...:.::... : .:..: . .:..:.:::::..:. :.. ::.
CCDS96 GFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB6 LMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFM
...:. . .. :::..:: : ::.. ....: .:: . .. ..:
CCDS96 IINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT-------RIRDRNWYVQPS----
110 120 130 140 150
180 190
pF1KB6 CSVLKRQGYGEGFRWLSQYID
:.. . .: ::. ::.
CCDS96 CAT-SGDGLYEGLTWLTSNYKS
160 170
>>CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5 (569 aa)
initn: 290 init1: 290 opt: 308 Z-score: 363.9 bits: 75.7 E(32554): 6e-14
Smith-Waterman score: 308; 33.6% identity (69.7% similar) in 152 aa overlap (27-178:406-556)
10 20 30 40 50
pF1KB6 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPT
..: ::::.:::::.: ::.:.. : .::
CCDS43 EVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPT
380 390 400 410 420 430
60 70 80 90 100 110
pF1KB6 LHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELN
. . : . .. :: .:.::... : .::.: ...::.:: . ..:. :.. ::
CCDS43 IGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELA
440 450 460 470 480 490
120 130 140 150 160 170
pF1KB6 ALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVF
:.:.. . .. .::..:: : . :.: :.. :...:. :. . .. .:: . .
CCDS43 KLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGR-SWYIQGCDARSVFQI
500 510 520 530 540 550
180 190
pF1KB6 MCSVLKRQGYGEGFRWLSQYID
.:
CCDS43 ICDQYTGKEVVTEKG
560
>>CCDS9419.1 ARL11 gene_id:115761|Hs108|chr13 (196 aa)
initn: 248 init1: 173 opt: 302 Z-score: 362.8 bits: 74.0 E(32554): 6.9e-14
Smith-Waterman score: 304; 32.9% identity (66.5% similar) in 173 aa overlap (22-193:9-169)
10 20 30 40 50 60
pF1KB6 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
.: ...:..:::.:::::::. :: .: . .::. .
CCDS94 MGSVNSRGHKAEAQVVMMGLDSAGKTTLLYKLKGHQLVETLPTVGFN
10 20 30 40
70 80 90 100 110
pF1KB6 SEELTIAG-MTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALM
: : : ...: .:.::. : ::.:: . . .:...: .:..:: :: .::. ..
CCDS94 VEPLKAPGHVSLTLWDVGGQAPLRASWKDYLEGTDILVYVLDSTDEARLPESAAELTEVL
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB6 TDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCS
.: ....::.:.:.:: . ::. :.:. ..:.... . :. ::
CCDS94 NDPNMAGVPFLVLANKQEAPDALPLLKIRN------------RLSLERFQDHCWELRGCS
110 120 130 140 150
180 190
pF1KB6 VLKRQGYGEGFRWLSQYID
.: .: :... :
CCDS94 ALTGEGLPEALQSLWSLLKSRSCMCLQARAHGAERGDSKRS
160 170 180 190
>>CCDS8088.1 ARL2 gene_id:402|Hs108|chr11 (184 aa)
initn: 301 init1: 278 opt: 298 Z-score: 358.6 bits: 73.1 E(32554): 1.2e-13
Smith-Waterman score: 298; 32.2% identity (71.3% similar) in 143 aa overlap (11-153:2-144)
10 20 30 40 50 60
pF1KB6 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
:. ..:. . .. .:..::::::::::.:. .. . . ::: .
CCDS80 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFN
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 SEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMT
. : :. .. .:.::... : :.::. . .:....:: ::..:. . . ::..:..
CCDS80 IKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLV
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 DETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSV
.: .... .::..:: : :.: . .::.. :
CCDS80 EERLAGATLLIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDW
120 130 140 150 160 170
190
pF1KB6 LKRQGYGEGFRWLSQYID
CCDS80 LLDDISSRIFTAD
180
>>CCDS2928.1 ARL6 gene_id:84100|Hs108|chr3 (186 aa)
initn: 320 init1: 163 opt: 297 Z-score: 357.3 bits: 72.9 E(32554): 1.4e-13
Smith-Waterman score: 325; 31.0% identity (67.9% similar) in 184 aa overlap (18-197:10-181)
10 20 30 40 50
pF1KB6 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLK-DDRLGQHV-PTLH
.::: :: ... :::::.::::... :: .. .:.. ::.
CCDS29 MGLLDRLSVLLGLKKKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 PTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNAL
. :.. ....::.::..:. . : .:..: ..:.:..: .:. :.: .: ::..:
CCDS29 FSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 MTDETISN--VPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVF
.. :.. .:::...::.: ::.. :. ... :.... .: ..
CCDS29 LNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLL------------CLENIKDKPWHIC
120 130 140 150 160
180 190
pF1KB6 MCSVLKRQGYGEGFRWLSQYID
...: .: :: ::.. :
CCDS29 ASDAIKGEGLQEGVDWLQDQIQTVKT
170 180
>>CCDS3986.1 TRIM23 gene_id:373|Hs108|chr5 (546 aa)
initn: 290 init1: 290 opt: 302 Z-score: 357.2 bits: 74.4 E(32554): 1.4e-13
Smith-Waterman score: 302; 35.8% identity (71.6% similar) in 134 aa overlap (27-160:406-539)
10 20 30 40 50
pF1KB6 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPT
..: ::::.:::::.: ::.:.. : .::
CCDS39 EVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPT
380 390 400 410 420 430
60 70 80 90 100 110
pF1KB6 LHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELN
. . : . .. :: .:.::... : .::.: ...::.:: . ..:. :.. ::
CCDS39 IGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELA
440 450 460 470 480 490
120 130 140 150 160 170
pF1KB6 ALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVF
:.:.. . .. .::..:: : . :.: :.. :...:. :.
CCDS39 KLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSCFSDNM
500 510 520 530 540
180 190
pF1KB6 MCSVLKRQGYGEGFRWLSQYID
>>CCDS3192.1 ARL14 gene_id:80117|Hs108|chr3 (192 aa)
initn: 284 init1: 198 opt: 297 Z-score: 357.2 bits: 72.9 E(32554): 1.4e-13
Smith-Waterman score: 319; 32.0% identity (64.6% similar) in 175 aa overlap (24-197:12-175)
10 20 30 40 50 60
pF1KB6 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
:......::::.:::.:::. :: . .::. .
CCDS31 MGSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFN
10 20 30 40
70 80 90 100 110
pF1KB6 SEELTIA-GMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALM
: . . ....:..:.::.:. : :: : .:.:..:: .:..:: ::. ... ..
CCDS31 VEMIELERNLSLTVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHIL
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB6 TDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCS
.: :.:::...:.:: : :.. : . ..: . : . : : :
CCDS31 KNEHIKNVPVVLLANKQDMPGALTAEDITRMFKVK-----------KLCSDRNWYVQPCC
110 120 130 140 150
180 190
pF1KB6 VLKRQGYGEGFRWLSQYID
.: .: ..::: :. ..
CCDS31 ALTGEGLAQGFRKLTGFVKSHMKSRGDTLAFFKQN
160 170 180 190
>>CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5 (574 aa)
initn: 316 init1: 290 opt: 302 Z-score: 356.9 bits: 74.4 E(32554): 1.5e-13
Smith-Waterman score: 318; 32.7% identity (64.9% similar) in 171 aa overlap (27-197:406-565)
10 20 30 40 50
pF1KB6 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPT
..: ::::.:::::.: ::.:.. : .::
CCDS39 EVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPT
380 390 400 410 420 430
60 70 80 90 100 110
pF1KB6 LHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELN
. . : . .. :: .:.::... : .::.: ...::.:: . ..:. :.. ::
CCDS39 IGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELA
440 450 460 470 480 490
120 130 140 150 160 170
pF1KB6 ALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVF
:.:.. . .. .::..:: : . :.: :.. :...:. : : .
CCDS39 KLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCG-----------RSWYIQ
500 510 520 530 540
180 190
pF1KB6 MCSVLKRQGYGEGFRWLSQYID
:.. . .: ::. :::. .
CCDS39 GCDARSGMGLYEGLDWLSRQLVAAGVLDVA
550 560 570
198 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:11:44 2016 done: Sat Nov 5 04:11:45 2016
Total Scan time: 1.590 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]