Result of FASTA (omim) for
pF1KB6857
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6857, 179 aa
1>>>pF1KB6857 179 - 179 aa - 179 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.5196+/-0.000356; mu= -0.4778+/- 0.022
mean_var=201.0906+/-40.796, 0's: 0 Z-trim(121.1): 9 B-trim: 773 in 2/56
Lambda= 0.090444
statistics sampled from 37194 (37203) to 37194 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.763), E-opt: 0.2 (0.436), width: 16
Scan time: 6.190
The best scores are: opt bits E(85289)
NP_008960 (OMIM: 600621) stathmin-2 isoform 2 [Hom ( 179) 1119 157.3 1.2e-38
XP_005251199 (OMIM: 600621) PREDICTED: stathmin-2 ( 174) 1091 153.6 1.5e-37
NP_001186143 (OMIM: 600621) stathmin-2 isoform 1 [ ( 187) 1001 141.9 5.4e-34
NP_056978 (OMIM: 608362) stathmin-3 isoform 1 [Hom ( 180) 808 116.7 2e-26
NP_001263239 (OMIM: 608362) stathmin-3 isoform 2 [ ( 169) 763 110.8 1.1e-24
NP_981944 (OMIM: 151442) stathmin isoform a [Homo ( 149) 610 90.8 1e-18
NP_981946 (OMIM: 151442) stathmin isoform a [Homo ( 149) 610 90.8 1e-18
NP_005554 (OMIM: 151442) stathmin isoform a [Homo ( 149) 610 90.8 1e-18
NP_001138926 (OMIM: 151442) stathmin isoform b [Ho ( 174) 557 84.0 1.4e-16
>>NP_008960 (OMIM: 600621) stathmin-2 isoform 2 [Homo sa (179 aa)
initn: 1119 init1: 1119 opt: 1119 Z-score: 814.7 bits: 157.3 E(85289): 1.2e-38
Smith-Waterman score: 1119; 100.0% identity (100.0% similar) in 179 aa overlap (1-179:1-179)
10 20 30 40 50 60
pF1KB6 MAKTAMAYKEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MAKTAMAYKEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PSPISEAPRTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 PSPISEAPRTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQKA
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 LEENNNFSKMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNKELQVELSG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 LEENNNFSKMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNKELQVELSG
130 140 150 160 170
>>XP_005251199 (OMIM: 600621) PREDICTED: stathmin-2 isof (174 aa)
initn: 1091 init1: 1091 opt: 1091 Z-score: 795.2 bits: 153.6 E(85289): 1.5e-37
Smith-Waterman score: 1091; 100.0% identity (100.0% similar) in 174 aa overlap (6-179:1-174)
10 20 30 40 50 60
pF1KB6 MAKTAMAYKEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAYKEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKP
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 PSPISEAPRTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PSPISEAPRTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQKA
60 70 80 90 100 110
130 140 150 160 170
pF1KB6 LEENNNFSKMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNKELQVELSG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LEENNNFSKMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNKELQVELSG
120 130 140 150 160 170
>>NP_001186143 (OMIM: 600621) stathmin-2 isoform 1 [Homo (187 aa)
initn: 1001 init1: 1001 opt: 1001 Z-score: 731.3 bits: 141.9 E(85289): 5.4e-34
Smith-Waterman score: 1001; 100.0% identity (100.0% similar) in 160 aa overlap (1-160:1-160)
10 20 30 40 50 60
pF1KB6 MAKTAMAYKEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAKTAMAYKEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PSPISEAPRTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSPISEAPRTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQKA
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 LEENNNFSKMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNKELQVELSG
::::::::::::::::::::::::::::::::::::::::
NP_001 LEENNNFSKMAEEKLILKMEQIKENREANLAAIIERLQEKLVKFISSELKESIESQFLEL
130 140 150 160 170 180
NP_001 QREGEKQ
>>NP_056978 (OMIM: 608362) stathmin-3 isoform 1 [Homo sa (180 aa)
initn: 510 init1: 510 opt: 808 Z-score: 595.4 bits: 116.7 E(85289): 2e-26
Smith-Waterman score: 808; 72.8% identity (86.7% similar) in 180 aa overlap (1-179:1-180)
10 20 30 40 50 60
pF1KB6 MAKTAMAYKEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKP
::.: ::::::::::.::::::::: .:. ..: : ::::::..::::::.::.:::
NP_056 MASTISAYKEKMKELSVLSLICSCFYTQPHPNTVYQYGDMEVKQLDKRASGQSFEVILKS
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 PSPIS-EAPRTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQK
:: .: :.: . ::::: ::::.::.:::::::::.:::::::::::.::::::::.:
NP_056 PSDLSPESPMLSSPPKKKDTSLEELQKRLEAAEERRKTQEAQVLKQLAERREHEREVLHK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 ALEENNNFSKMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNKELQVELSG
:::::::::..::::: ::: :: :::.:::. :::.::: :::::::::: . :.::
NP_056 ALEENNNFSRQAEEKLNYKMELSKEIREAHLAALRERLREKELHAAEVRRNKEQREEMSG
130 140 150 160 170 180
>>NP_001263239 (OMIM: 608362) stathmin-3 isoform 2 [Homo (169 aa)
initn: 510 init1: 510 opt: 763 Z-score: 564.0 bits: 110.8 E(85289): 1.1e-24
Smith-Waterman score: 763; 72.8% identity (87.0% similar) in 169 aa overlap (12-179:1-169)
10 20 30 40 50 60
pF1KB6 MAKTAMAYKEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKP
:::::.::::::::: .:. ..: : ::::::..::::::.::.:::
NP_001 MKELSVLSLICSCFYTQPHPNTVYQYGDMEVKQLDKRASGQSFEVILKS
10 20 30 40
70 80 90 100 110
pF1KB6 PSPIS-EAPRTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQK
:: .: :.: . ::::: ::::.::.:::::::::.:::::::::::.::::::::.:
NP_001 PSDLSPESPMLSSPPKKKDTSLEELQKRLEAAEERRKTQEAQVLKQLAERREHEREVLHK
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB6 ALEENNNFSKMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNKELQVELSG
:::::::::..::::: ::: :: :::.:::. :::.::: :::::::::: . :.::
NP_001 ALEENNNFSRQAEEKLNYKMELSKEIREAHLAALRERLREKELHAAEVRRNKEQREEMSG
110 120 130 140 150 160
>>NP_981944 (OMIM: 151442) stathmin isoform a [Homo sapi (149 aa)
initn: 610 init1: 610 opt: 610 Z-score: 456.9 bits: 90.8 E(85289): 1e-18
Smith-Waterman score: 610; 74.6% identity (88.1% similar) in 134 aa overlap (39-172:5-138)
10 20 30 40 50 60
pF1KB6 KEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKPPSPISEAP
:..::...::::::::::::.: : :
NP_981 MASSDIQVKELEKRASGQAFELILSPRSKESVPE
10 20 30
70 80 90 100 110 120
pF1KB6 RTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQKALEENNNFS
:. ::::::::::::::::::::::::.::.::::::::::::.::::::.:::::::
NP_981 FPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFS
40 50 60 70 80 90
130 140 150 160 170
pF1KB6 KMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNKELQVELSG
::::::: ::: ::::::..:: .:::.::..: :::.:::
NP_981 KMAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD
100 110 120 130 140
>>NP_981946 (OMIM: 151442) stathmin isoform a [Homo sapi (149 aa)
initn: 610 init1: 610 opt: 610 Z-score: 456.9 bits: 90.8 E(85289): 1e-18
Smith-Waterman score: 610; 74.6% identity (88.1% similar) in 134 aa overlap (39-172:5-138)
10 20 30 40 50 60
pF1KB6 KEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKPPSPISEAP
:..::...::::::::::::.: : :
NP_981 MASSDIQVKELEKRASGQAFELILSPRSKESVPE
10 20 30
70 80 90 100 110 120
pF1KB6 RTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQKALEENNNFS
:. ::::::::::::::::::::::::.::.::::::::::::.::::::.:::::::
NP_981 FPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFS
40 50 60 70 80 90
130 140 150 160 170
pF1KB6 KMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNKELQVELSG
::::::: ::: ::::::..:: .:::.::..: :::.:::
NP_981 KMAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD
100 110 120 130 140
>>NP_005554 (OMIM: 151442) stathmin isoform a [Homo sapi (149 aa)
initn: 610 init1: 610 opt: 610 Z-score: 456.9 bits: 90.8 E(85289): 1e-18
Smith-Waterman score: 610; 74.6% identity (88.1% similar) in 134 aa overlap (39-172:5-138)
10 20 30 40 50 60
pF1KB6 KEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKPPSPISEAP
:..::...::::::::::::.: : :
NP_005 MASSDIQVKELEKRASGQAFELILSPRSKESVPE
10 20 30
70 80 90 100 110 120
pF1KB6 RTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQKALEENNNFS
:. ::::::::::::::::::::::::.::.::::::::::::.::::::.:::::::
NP_005 FPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFS
40 50 60 70 80 90
130 140 150 160 170
pF1KB6 KMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNKELQVELSG
::::::: ::: ::::::..:: .:::.::..: :::.:::
NP_005 KMAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD
100 110 120 130 140
>>NP_001138926 (OMIM: 151442) stathmin isoform b [Homo s (174 aa)
initn: 557 init1: 557 opt: 557 Z-score: 418.6 bits: 84.0 E(85289): 1.4e-16
Smith-Waterman score: 557; 76.2% identity (88.5% similar) in 122 aa overlap (39-160:5-126)
10 20 30 40 50 60
pF1KB6 KEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKPPSPISEAP
:..::...::::::::::::.: : :
NP_001 MASSDIQVKELEKRASGQAFELILSPRSKESVPE
10 20 30
70 80 90 100 110 120
pF1KB6 RTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQKALEENNNFS
:. ::::::::::::::::::::::::.::.::::::::::::.::::::.:::::::
NP_001 FPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFS
40 50 60 70 80 90
130 140 150 160 170
pF1KB6 KMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNKELQVELSG
::::::: ::: ::::::..:: .:::.::
NP_001 KMAEEKLTHKMEANKENREAQMAAKLERLREKMYFWTHGPGAHPAQISAEQSCLHSVPAL
100 110 120 130 140 150
NP_001 CPALGLQSALITWSDLSHHH
160 170
179 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 18:19:15 2016 done: Sat Nov 5 18:19:16 2016
Total Scan time: 6.190 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]