Result of FASTA (ccds) for
pF1KB6857
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6857, 179 aa
1>>>pF1KB6857 179 - 179 aa - 179 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.6073+/-0.000881; mu= -0.9879+/- 0.053
mean_var=192.5917+/-37.971, 0's: 0 Z-trim(113.3): 13 B-trim: 0 in 0/53
Lambda= 0.092418
statistics sampled from 13954 (13965) to 13954 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.763), E-opt: 0.2 (0.429), width: 16
Scan time: 2.220
The best scores are: opt bits E(32554)
CCDS43748.1 STMN2 gene_id:11075|Hs108|chr8 ( 179) 1119 160.4 5.4e-40
CCDS56542.1 STMN2 gene_id:11075|Hs108|chr8 ( 187) 1001 144.7 3.1e-35
CCDS13529.1 STMN3 gene_id:50861|Hs108|chr20 ( 180) 808 118.9 1.7e-27
CCDS63330.1 STMN3 gene_id:50861|Hs108|chr20 ( 169) 763 112.9 1e-25
CCDS269.1 STMN1 gene_id:3925|Hs108|chr1 ( 149) 610 92.5 1.3e-19
CCDS64852.1 STMN4 gene_id:81551|Hs108|chr8 ( 189) 601 91.3 3.5e-19
CCDS6055.1 STMN4 gene_id:81551|Hs108|chr8 ( 216) 601 91.4 3.9e-19
CCDS44090.1 STMN1 gene_id:3925|Hs108|chr1 ( 174) 557 85.5 1.9e-17
CCDS64851.1 STMN4 gene_id:81551|Hs108|chr8 ( 167) 540 83.2 8.9e-17
CCDS64854.1 STMN4 gene_id:81551|Hs108|chr8 ( 203) 540 83.2 1e-16
>>CCDS43748.1 STMN2 gene_id:11075|Hs108|chr8 (179 aa)
initn: 1119 init1: 1119 opt: 1119 Z-score: 831.5 bits: 160.4 E(32554): 5.4e-40
Smith-Waterman score: 1119; 100.0% identity (100.0% similar) in 179 aa overlap (1-179:1-179)
10 20 30 40 50 60
pF1KB6 MAKTAMAYKEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MAKTAMAYKEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PSPISEAPRTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PSPISEAPRTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQKA
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 LEENNNFSKMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNKELQVELSG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LEENNNFSKMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNKELQVELSG
130 140 150 160 170
>>CCDS56542.1 STMN2 gene_id:11075|Hs108|chr8 (187 aa)
initn: 1001 init1: 1001 opt: 1001 Z-score: 746.2 bits: 144.7 E(32554): 3.1e-35
Smith-Waterman score: 1001; 100.0% identity (100.0% similar) in 160 aa overlap (1-160:1-160)
10 20 30 40 50 60
pF1KB6 MAKTAMAYKEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MAKTAMAYKEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PSPISEAPRTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 PSPISEAPRTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQKA
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 LEENNNFSKMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNKELQVELSG
::::::::::::::::::::::::::::::::::::::::
CCDS56 LEENNNFSKMAEEKLILKMEQIKENREANLAAIIERLQEKLVKFISSELKESIESQFLEL
130 140 150 160 170 180
CCDS56 QREGEKQ
>>CCDS13529.1 STMN3 gene_id:50861|Hs108|chr20 (180 aa)
initn: 510 init1: 510 opt: 808 Z-score: 607.3 bits: 118.9 E(32554): 1.7e-27
Smith-Waterman score: 808; 72.8% identity (86.7% similar) in 180 aa overlap (1-179:1-180)
10 20 30 40 50 60
pF1KB6 MAKTAMAYKEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKP
::.: ::::::::::.::::::::: .:. ..: : ::::::..::::::.::.:::
CCDS13 MASTISAYKEKMKELSVLSLICSCFYTQPHPNTVYQYGDMEVKQLDKRASGQSFEVILKS
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 PSPIS-EAPRTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQK
:: .: :.: . ::::: ::::.::.:::::::::.:::::::::::.::::::::.:
CCDS13 PSDLSPESPMLSSPPKKKDTSLEELQKRLEAAEERRKTQEAQVLKQLAERREHEREVLHK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 ALEENNNFSKMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNKELQVELSG
:::::::::..::::: ::: :: :::.:::. :::.::: :::::::::: . :.::
CCDS13 ALEENNNFSRQAEEKLNYKMELSKEIREAHLAALRERLREKELHAAEVRRNKEQREEMSG
130 140 150 160 170 180
>>CCDS63330.1 STMN3 gene_id:50861|Hs108|chr20 (169 aa)
initn: 510 init1: 510 opt: 763 Z-score: 575.3 bits: 112.9 E(32554): 1e-25
Smith-Waterman score: 763; 72.8% identity (87.0% similar) in 169 aa overlap (12-179:1-169)
10 20 30 40 50 60
pF1KB6 MAKTAMAYKEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKP
:::::.::::::::: .:. ..: : ::::::..::::::.::.:::
CCDS63 MKELSVLSLICSCFYTQPHPNTVYQYGDMEVKQLDKRASGQSFEVILKS
10 20 30 40
70 80 90 100 110
pF1KB6 PSPIS-EAPRTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQK
:: .: :.: . ::::: ::::.::.:::::::::.:::::::::::.::::::::.:
CCDS63 PSDLSPESPMLSSPPKKKDTSLEELQKRLEAAEERRKTQEAQVLKQLAERREHEREVLHK
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB6 ALEENNNFSKMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNKELQVELSG
:::::::::..::::: ::: :: :::.:::. :::.::: :::::::::: . :.::
CCDS63 ALEENNNFSRQAEEKLNYKMELSKEIREAHLAALRERLREKELHAAEVRRNKEQREEMSG
110 120 130 140 150 160
>>CCDS269.1 STMN1 gene_id:3925|Hs108|chr1 (149 aa)
initn: 610 init1: 610 opt: 610 Z-score: 465.8 bits: 92.5 E(32554): 1.3e-19
Smith-Waterman score: 610; 74.6% identity (88.1% similar) in 134 aa overlap (39-172:5-138)
10 20 30 40 50 60
pF1KB6 KEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKPPSPISEAP
:..::...::::::::::::.: : :
CCDS26 MASSDIQVKELEKRASGQAFELILSPRSKESVPE
10 20 30
70 80 90 100 110 120
pF1KB6 RTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQKALEENNNFS
:. ::::::::::::::::::::::::.::.::::::::::::.::::::.:::::::
CCDS26 FPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFS
40 50 60 70 80 90
130 140 150 160 170
pF1KB6 KMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNKELQVELSG
::::::: ::: ::::::..:: .:::.::..: :::.:::
CCDS26 KMAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD
100 110 120 130 140
>>CCDS64852.1 STMN4 gene_id:81551|Hs108|chr8 (189 aa)
initn: 755 init1: 590 opt: 601 Z-score: 457.9 bits: 91.3 E(32554): 3.5e-19
Smith-Waterman score: 698; 63.3% identity (80.3% similar) in 188 aa overlap (4-178:2-188)
10 20 30 40
pF1KB6 MAKTAMAYKEKMKELSMLSLICSCFYPEPRNINIYTYD------------DMEVKQINKR
: ::::::::: ..::.:::: .: : . : :. :::: ..::
CCDS64 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKC
10 20 30 40 50
50 60 70 80 90 100
pF1KB6 ASGQAFELILKPPSPISEAPRTLAS-PKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLA
.:::.::.:::::: .. .:. :: :...: ::::::::::::::::: :::..::.::
CCDS64 TSGQSFEVILKPPS-FDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLA
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB6 EKREHEREVLQKALEENNNFSKMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEV
:::::::::.:::.:::::: :::.::: :::. ::::::.:::..::::::..:: ::
CCDS64 EKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEV
120 130 140 150 160 170
170
pF1KB6 RRNKELQVELSG
:.::::. : :
CCDS64 RKNKELKEEASR
180
>>CCDS6055.1 STMN4 gene_id:81551|Hs108|chr8 (216 aa)
initn: 770 init1: 590 opt: 601 Z-score: 457.0 bits: 91.4 E(32554): 3.9e-19
Smith-Waterman score: 637; 55.5% identity (70.6% similar) in 211 aa overlap (8-178:6-215)
10 20 30
pF1KB6 MAKTAMAYKEKMKELSMLSLICSCFYPEPRNINIYTYD----------------------
:::::::: ..::.:::: .: : . : :.
CCDS60 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEGWCGRQCRRKDESQRKDSADWR
10 20 30 40 50
40 50 60 70 80
pF1KB6 -----------------DMEVKQINKRASGQAFELILKPPSPISEAPRTLAS-PKKKDLS
:::: ..:: .:::.::.:::::: .. .:. :: :...: :
CCDS60 ERRAQADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPS-FDGVPEFNASLPRRRDPS
60 70 80 90 100 110
90 100 110 120 130 140
pF1KB6 LEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQKALEENNNFSKMAEEKLILKME
:::::::::::::::: :::..::.:::::::::::.:::.:::::: :::.::: :::
CCDS60 LEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKME
120 130 140 150 160 170
150 160 170
pF1KB6 QIKENREANLAAIIERLQEKERHAAEVRRNKELQVELSG
. ::::::.:::..::::::..:: :::.::::. : :
CCDS60 SNKENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR
180 190 200 210
>>CCDS44090.1 STMN1 gene_id:3925|Hs108|chr1 (174 aa)
initn: 557 init1: 557 opt: 557 Z-score: 426.7 bits: 85.5 E(32554): 1.9e-17
Smith-Waterman score: 557; 76.2% identity (88.5% similar) in 122 aa overlap (39-160:5-126)
10 20 30 40 50 60
pF1KB6 KEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKPPSPISEAP
:..::...::::::::::::.: : :
CCDS44 MASSDIQVKELEKRASGQAFELILSPRSKESVPE
10 20 30
70 80 90 100 110 120
pF1KB6 RTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQKALEENNNFS
:. ::::::::::::::::::::::::.::.::::::::::::.::::::.:::::::
CCDS44 FPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFS
40 50 60 70 80 90
130 140 150 160 170
pF1KB6 KMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNKELQVELSG
::::::: ::: ::::::..:: .:::.::
CCDS44 KMAEEKLTHKMEANKENREAQMAAKLERLREKMYFWTHGPGAHPAQISAEQSCLHSVPAL
100 110 120 130 140 150
CCDS44 CPALGLQSALITWSDLSHHH
160 170
>>CCDS64851.1 STMN4 gene_id:81551|Hs108|chr8 (167 aa)
initn: 605 init1: 529 opt: 540 Z-score: 414.7 bits: 83.2 E(32554): 8.9e-17
Smith-Waterman score: 604; 62.9% identity (79.6% similar) in 167 aa overlap (12-165:1-166)
10 20 30 40
pF1KB6 MAKTAMAYKEKMKELSMLSLICSCFYPEPRNINIYTYD------------DMEVKQINKR
:::: ..::.:::: .: : . : :. :::: ..::
CCDS64 MKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKC
10 20 30 40
50 60 70 80 90 100
pF1KB6 ASGQAFELILKPPSPISEAPRTLAS-PKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLA
.:::.::.:::::: .. .:. :: :...: ::::::::::::::::: :::..::.::
CCDS64 TSGQSFEVILKPPS-FDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLA
50 60 70 80 90 100
110 120 130 140 150 160
pF1KB6 EKREHEREVLQKALEENNNFSKMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEV
:::::::::.:::.:::::: :::.::: :::. ::::::.:::..::::::: ::
CCDS64 EKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKEPPAAR
110 120 130 140 150 160
170
pF1KB6 RRNKELQVELSG
>>CCDS64854.1 STMN4 gene_id:81551|Hs108|chr8 (203 aa)
initn: 529 init1: 529 opt: 540 Z-score: 413.5 bits: 83.2 E(32554): 1e-16
Smith-Waterman score: 576; 55.1% identity (69.2% similar) in 198 aa overlap (8-165:6-202)
10 20 30
pF1KB6 MAKTAMAYKEKMKELSMLSLICSCFYPEPRNINIYTYD----------------------
:::::::: ..::.:::: .: : . : :.
CCDS64 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEGWCGRQCRRKDESQRKDSADWR
10 20 30 40 50
40 50 60 70 80
pF1KB6 -----------------DMEVKQINKRASGQAFELILKPPSPISEAPRTLAS-PKKKDLS
:::: ..:: .:::.::.:::::: .. .:. :: :...: :
CCDS64 ERRAQADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPS-FDGVPEFNASLPRRRDPS
60 70 80 90 100 110
90 100 110 120 130 140
pF1KB6 LEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQKALEENNNFSKMAEEKLILKME
:::::::::::::::: :::..::.:::::::::::.:::.:::::: :::.::: :::
CCDS64 LEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKME
120 130 140 150 160 170
150 160 170
pF1KB6 QIKENREANLAAIIERLQEKERHAAEVRRNKELQVELSG
. ::::::.:::..::::::: ::
CCDS64 SNKENREAHLAAMLERLQEKEPPAAR
180 190 200
179 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 18:19:15 2016 done: Sat Nov 5 18:19:15 2016
Total Scan time: 2.220 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]