FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6846, 193 aa
  1>>>pF1KB6846 193 - 193 aa - 193 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1465+/-0.000647; mu= 13.8650+/- 0.039
 mean_var=59.9501+/-12.141, 0's: 0 Z-trim(111.2): 9  B-trim: 412 in 1/50
 Lambda= 0.165645
 statistics sampled from 12208 (12214) to 12208 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.375), width:  16
 Scan time:  2.000

The best scores are:                                      opt bits E(32554)
CCDS5705.1 EPO gene_id:2056|Hs108|chr7             ( 193) 1280 313.5   5e-86


>>CCDS5705.1 EPO gene_id:2056|Hs108|chr7                  (193 aa)
 initn: 1280 init1: 1280 opt: 1280  Z-score: 1657.9  bits: 313.5 E(32554): 5e-86
Smith-Waterman score: 1280; 100.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193)

               10        20        30        40        50        60
pF1KB6 MGVHECPAWLWLLLSLLSLPLGLPVLGAPPRLICDSRVLERYLLEAKEAENITTGCAEHC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 MGVHECPAWLWLLLSLLSLPLGLPVLGAPPRLICDSRVLERYLLEAKEAENITTGCAEHC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SLNENITVPDTKVNFYAWKRMEVGQQAVEVWQGLALLSEAVLRGQALLVNSSQPWEPLQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 SLNENITVPDTKVNFYAWKRMEVGQQAVEVWQGLALLSEAVLRGQALLVNSSQPWEPLQL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 HVDKAVSGLRSLTTLLRALGAQKEAISPPDAASAAPLRTITADTFRKLFRVYSNFLRGKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 HVDKAVSGLRSLTTLLRALGAQKEAISPPDAASAAPLRTITADTFRKLFRVYSNFLRGKL
              130       140       150       160       170       180

              190   
pF1KB6 KLYTGEACRTGDR
       :::::::::::::
CCDS57 KLYTGEACRTGDR
              190   




193 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:29:01 2016 done: Sat Nov  5 00:29:01 2016
 Total Scan time:  2.000 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]