FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6843, 175 aa
  1>>>pF1KB6843 175 - 175 aa - 175 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1979+/-0.000598; mu= 12.9873+/- 0.036
 mean_var=58.1162+/-11.550, 0's: 0 Z-trim(111.2): 6  B-trim: 0 in 0/50
 Lambda= 0.168239
 statistics sampled from 12217 (12218) to 12217 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.755), E-opt: 0.2 (0.375), width:  16
 Scan time:  1.830

The best scores are:                                      opt bits E(32554)
CCDS31412.1 MRPL17 gene_id:63875|Hs108|chr11       ( 175) 1170 291.5 1.8e-79


>>CCDS31412.1 MRPL17 gene_id:63875|Hs108|chr11            (175 aa)
 initn: 1170 init1: 1170 opt: 1170  Z-score: 1540.1  bits: 291.5 E(32554): 1.8e-79
Smith-Waterman score: 1170; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:1-175)

               10        20        30        40        50        60
pF1KB6 MRLSVAAAISHGRVFRRMGLGPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MRLSVAAAISHGRVFRRMGLGPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQTGGYTRMLQIPNRSLDRAKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQTGGYTRMLQIPNRSLDRAKM
               70        80        90       100       110       120

              130       140       150       160       170     
pF1KB6 AVIEYKGNCLPPLPLPRRDSHLTLLNQLLQGLRQDLRQSQEASNHSSHTAQTPGI
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AVIEYKGNCLPPLPLPRRDSHLTLLNQLLQGLRQDLRQSQEASNHSSHTAQTPGI
              130       140       150       160       170     




175 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:22:42 2016 done: Sat Nov  5 00:22:42 2016
 Total Scan time:  1.830 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]