FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6837, 172 aa
  1>>>pF1KB6837 172 - 172 aa - 172 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5014+/-0.000288; mu= 4.5816+/- 0.018
 mean_var=171.2402+/-34.233, 0's: 0 Z-trim(123.3): 3  B-trim: 22 in 1/57
 Lambda= 0.098010
 statistics sampled from 42748 (42751) to 42748 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.819), E-opt: 0.2 (0.501), width:  16
 Scan time:  6.730

The best scores are:                                      opt bits E(85289)
NP_036520 (OMIM: 604310,614171) biogenesis of lyso ( 172) 1112 167.8 7.7e-42
NP_001298184 (OMIM: 604310,614171) biogenesis of l ( 177)  913 139.7 2.3e-33
NP_001298185 (OMIM: 604310,614171) biogenesis of l (  91)  300 52.8 1.8e-07


>>NP_036520 (OMIM: 604310,614171) biogenesis of lysosome  (172 aa)
 initn: 1112 init1: 1112 opt: 1112  Z-score: 872.1  bits: 167.8 E(85289): 7.7e-42
Smith-Waterman score: 1112; 100.0% identity (100.0% similar) in 172 aa overlap (1-172:1-172)

               10        20        30        40        50        60
pF1KB6 MSVPGPSSPDGALTRPPYCLEAGEPTPGLSDTSPDEGLIEDLTIEDKAVEQLAEGLLSHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MSVPGPSSPDGALTRPPYCLEAGEPTPGLSDTSPDEGLIEDLTIEDKAVEQLAEGLLSHY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LPDLQRSKQALQELTQNQVVLLDTLEQEISKFKECHSMLDINALFAEAKHYHAKLVNIRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 LPDLQRSKQALQELTQNQVVLLDTLEQEISKFKECHSMLDINALFAEAKHYHAKLVNIRK
               70        80        90       100       110       120

              130       140       150       160       170  
pF1KB6 EMLMLHEKTSKLKKRALKLQQKRQKEELEREQQREKEFEREKQLTARPAKRM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 EMLMLHEKTSKLKKRALKLQQKRQKEELEREQQREKEFEREKQLTARPAKRM
              130       140       150       160       170  

>>NP_001298184 (OMIM: 604310,614171) biogenesis of lysos  (177 aa)
 initn: 913 init1: 913 opt: 913  Z-score: 719.9  bits: 139.7 E(85289): 2.3e-33
Smith-Waterman score: 913; 100.0% identity (100.0% similar) in 145 aa overlap (28-172:33-177)

                  10        20        30        40        50       
pF1KB6    MSVPGPSSPDGALTRPPYCLEAGEPTPGLSDTSPDEGLIEDLTIEDKAVEQLAEGLL
                                     ::::::::::::::::::::::::::::::
NP_001 GTEVPRGSFVLGVQLKAVDGEAILSLCVDSGLSDTSPDEGLIEDLTIEDKAVEQLAEGLL
             10        20        30        40        50        60  

        60        70        80        90       100       110       
pF1KB6 SHYLPDLQRSKQALQELTQNQVVLLDTLEQEISKFKECHSMLDINALFAEAKHYHAKLVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SHYLPDLQRSKQALQELTQNQVVLLDTLEQEISKFKECHSMLDINALFAEAKHYHAKLVN
             70        80        90       100       110       120  

       120       130       140       150       160       170  
pF1KB6 IRKEMLMLHEKTSKLKKRALKLQQKRQKEELEREQQREKEFEREKQLTARPAKRM
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IRKEMLMLHEKTSKLKKRALKLQQKRQKEELEREQQREKEFEREKQLTARPAKRM
            130       140       150       160       170       

>>NP_001298185 (OMIM: 604310,614171) biogenesis of lysos  (91 aa)
 initn: 300 init1: 300 opt: 300  Z-score: 255.3  bits: 52.8 E(85289): 1.8e-07
Smith-Waterman score: 300; 100.0% identity (100.0% similar) in 48 aa overlap (28-75:33-80)

                  10        20        30        40        50       
pF1KB6    MSVPGPSSPDGALTRPPYCLEAGEPTPGLSDTSPDEGLIEDLTIEDKAVEQLAEGLL
                                     ::::::::::::::::::::::::::::::
NP_001 GTEVPRGSFVLGVQLKAVDGEAILSLCVDSGLSDTSPDEGLIEDLTIEDKAVEQLAEGLL
             10        20        30        40        50        60  

        60        70        80        90       100       110       
pF1KB6 SHYLPDLQRSKQALQELTQNQVVLLDTLEQEISKFKECHSMLDINALFAEAKHYHAKLVN
       ::::::::::::::::::                                          
NP_001 SHYLPDLQRSKQALQELTLLRLNTIMPSW                               
             70        80        90                                




172 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:03:39 2016 done: Sat Nov  5 14:03:40 2016
 Total Scan time:  6.730 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]