FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6837, 172 aa
  1>>>pF1KB6837 172 - 172 aa - 172 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3507+/-0.000683; mu= 5.3169+/- 0.041
 mean_var=150.4695+/-29.676, 0's: 0 Z-trim(115.6): 6  B-trim: 0 in 0/54
 Lambda= 0.104556
 statistics sampled from 16212 (16214) to 16212 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.816), E-opt: 0.2 (0.498), width:  16
 Scan time:  2.050

The best scores are:                                      opt bits E(32554)
CCDS10126.1 BLOC1S6 gene_id:26258|Hs108|chr15      ( 172) 1112 177.9 2.7e-45
CCDS81878.1 BLOC1S6 gene_id:26258|Hs108|chr15      ( 177)  913 147.9   3e-36


>>CCDS10126.1 BLOC1S6 gene_id:26258|Hs108|chr15           (172 aa)
 initn: 1112 init1: 1112 opt: 1112  Z-score: 926.8  bits: 177.9 E(32554): 2.7e-45
Smith-Waterman score: 1112; 100.0% identity (100.0% similar) in 172 aa overlap (1-172:1-172)

               10        20        30        40        50        60
pF1KB6 MSVPGPSSPDGALTRPPYCLEAGEPTPGLSDTSPDEGLIEDLTIEDKAVEQLAEGLLSHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSVPGPSSPDGALTRPPYCLEAGEPTPGLSDTSPDEGLIEDLTIEDKAVEQLAEGLLSHY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LPDLQRSKQALQELTQNQVVLLDTLEQEISKFKECHSMLDINALFAEAKHYHAKLVNIRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LPDLQRSKQALQELTQNQVVLLDTLEQEISKFKECHSMLDINALFAEAKHYHAKLVNIRK
               70        80        90       100       110       120

              130       140       150       160       170  
pF1KB6 EMLMLHEKTSKLKKRALKLQQKRQKEELEREQQREKEFEREKQLTARPAKRM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EMLMLHEKTSKLKKRALKLQQKRQKEELEREQQREKEFEREKQLTARPAKRM
              130       140       150       160       170  

>>CCDS81878.1 BLOC1S6 gene_id:26258|Hs108|chr15           (177 aa)
 initn: 913 init1: 913 opt: 913  Z-score: 764.4  bits: 147.9 E(32554): 3e-36
Smith-Waterman score: 913; 100.0% identity (100.0% similar) in 145 aa overlap (28-172:33-177)

                  10        20        30        40        50       
pF1KB6    MSVPGPSSPDGALTRPPYCLEAGEPTPGLSDTSPDEGLIEDLTIEDKAVEQLAEGLL
                                     ::::::::::::::::::::::::::::::
CCDS81 GTEVPRGSFVLGVQLKAVDGEAILSLCVDSGLSDTSPDEGLIEDLTIEDKAVEQLAEGLL
             10        20        30        40        50        60  

        60        70        80        90       100       110       
pF1KB6 SHYLPDLQRSKQALQELTQNQVVLLDTLEQEISKFKECHSMLDINALFAEAKHYHAKLVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SHYLPDLQRSKQALQELTQNQVVLLDTLEQEISKFKECHSMLDINALFAEAKHYHAKLVN
             70        80        90       100       110       120  

       120       130       140       150       160       170  
pF1KB6 IRKEMLMLHEKTSKLKKRALKLQQKRQKEELEREQQREKEFEREKQLTARPAKRM
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 IRKEMLMLHEKTSKLKKRALKLQQKRQKEELEREQQREKEFEREKQLTARPAKRM
            130       140       150       160       170       




172 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:03:39 2016 done: Sat Nov  5 14:03:39 2016
 Total Scan time:  2.050 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]