FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6836, 175 aa
  1>>>pF1KB6836 175 - 175 aa - 175 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7874+/-0.000329; mu= 16.0504+/- 0.021
 mean_var=70.8840+/-14.096, 0's: 0 Z-trim(115.2): 30  B-trim: 0 in 0/55
 Lambda= 0.152335
 statistics sampled from 25528 (25546) to 25528 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.3), width:  16
 Scan time:  5.790

The best scores are:                                      opt bits E(85289)
NP_000137 (OMIM: 134790,600886,606159,615604) ferr ( 175) 1152 261.7 4.4e-70
NP_002023 (OMIM: 134770,615517) ferritin heavy cha ( 183)  696 161.5 6.6e-40
NP_803431 (OMIM: 608847) ferritin, mitochondrial p ( 242)  654 152.4 4.9e-37
NP_114100 (OMIM: 300308) ferritin heavy polypeptid ( 183)  576 135.1 5.8e-32


>>NP_000137 (OMIM: 134790,600886,606159,615604) ferritin  (175 aa)
 initn: 1152 init1: 1152 opt: 1152  Z-score: 1379.3  bits: 261.7 E(85289): 4.4e-70
Smith-Waterman score: 1152; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:1-175)

               10        20        30        40        50        60
pF1KB6 MSSQIRQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MSSQIRQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EGYERLLKMQNQRGGRALFQDIKKPAEDEWGKTPDAMKAAMALEKKLNQALLDLHALGSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 EGYERLLKMQNQRGGRALFQDIKKPAEDEWGKTPDAMKAAMALEKKLNQALLDLHALGSA
               70        80        90       100       110       120

              130       140       150       160       170     
pF1KB6 RTDPHLCDFLETHFLDEEVKLIKKMGDHLTNLHRLGGPEAGLGEYLFERLTLKHD
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 RTDPHLCDFLETHFLDEEVKLIKKMGDHLTNLHRLGGPEAGLGEYLFERLTLKHD
              130       140       150       160       170     

>>NP_002023 (OMIM: 134770,615517) ferritin heavy chain [  (183 aa)
 initn: 696 init1: 696 opt: 696  Z-score: 837.4  bits: 161.5 E(85289): 6.6e-40
Smith-Waterman score: 696; 56.7% identity (86.0% similar) in 171 aa overlap (2-172:6-176)

                   10        20        30        40        50      
pF1KB6     MSSQIRQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELA
            .::.::::  : :::.:  .:: : :::.:::...:::::::::.. ...: . .
NP_002 MTTASTSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQS
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KB6 EEKREGYERLLKMQNQRGGRALFQDIKKPAEDEWGKTPDAMKAAMALEKKLNQALLDLHA
       .:.::  :.:.:.::::::: ..::::::  :.: .  .::. :. :::..::.::.:: 
NP_002 HEEREHAEKLMKLQNQRGGRIFLQDIKKPDCDDWESGLNAMECALHLEKNVNQSLLELHK
               70        80        90       100       110       120

        120       130       140       150       160       170      
pF1KB6 LGSARTDPHLCDFLETHFLDEEVKLIKKMGDHLTNLHRLGGPEAGLGEYLFERLTLKHD 
       :.. ..:::::::.:::.:.:.:: ::..:::.:::...:.::.::.::::.. ::    
NP_002 LATDKNDPHLCDFIETHYLNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLGDSD
              130       140       150       160       170       180

NP_002 NES
          

>>NP_803431 (OMIM: 608847) ferritin, mitochondrial precu  (242 aa)
 initn: 660 init1: 644 opt: 654  Z-score: 785.9  bits: 152.4 E(85289): 4.9e-37
Smith-Waterman score: 654; 54.3% identity (82.7% similar) in 173 aa overlap (3-175:66-238)

                                           10        20        30  
pF1KB6                             MSSQIRQNYSTDVEAAVNSLVNLYLQASYTYL
                                     :..:::.  : :::.:  .:: : :::.::
NP_803 RPLDPRQIAPRRPLAAAASSRDPTGPAAGPSRVRQNFHPDSEAAINRQINLELYASYVYL
          40        50        60        70        80        90     

             40        50        60        70        80        90  
pF1KB6 SLGFYFDRDDVALEGVSHFFRELAEEKREGYERLLKMQNQRGGRALFQDIKKPAEDEWGK
       :...::.::::::.. :..: . ..:. :  :.:...:::::::  .:::::: .:.: .
NP_803 SMAYYFSRDDVALNNFSRYFLHQSREETEHAEKLMRLQNQRGGRIRLQDIKKPEQDDWES
         100       110       120       130       140       150     

            100       110       120       130       140       150  
pF1KB6 TPDAMKAAMALEKKLNQALLDLHALGSARTDPHLCDFLETHFLDEEVKLIKKMGDHLTNL
          ::. :. :::..::.::.::::.: . ::::::::::..:.:.:: ::..:::. ::
NP_803 GLHAMECALLLEKNVNQSLLELHALASDKGDPHLCDFLETYYLNEQVKSIKELGDHVHNL
         160       170       180       190       200       210     

            160       170         
pF1KB6 HRLGGPEAGLGEYLFERLTLKHD    
        ..:.:.:::.::::.  :: ..    
NP_803 VKMGAPDAGLAEYLFDTHTLGNENKQN
         220       230       240  

>>NP_114100 (OMIM: 300308) ferritin heavy polypeptide-li  (183 aa)
 initn: 576 init1: 576 opt: 576  Z-score: 694.9  bits: 135.1 E(85289): 5.8e-32
Smith-Waterman score: 576; 49.4% identity (81.8% similar) in 170 aa overlap (3-172:7-176)

                   10        20        30        40        50      
pF1KB6     MSSQIRQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELA
             ::.::.:.:. .::.:: ..: : .:: :::..:::.:::::::.  ..: .:.
NP_114 MATAQPSQVRQKYDTNCDAAINSHITLELYTSYLYLSMAFYFNRDDVALENFFRYFLRLS
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KB6 EEKREGYERLLKMQNQRGGRALFQDIKKPAEDEWGKTPDAMKAAMALEKKLNQALLDLHA
       ..: :  ..:...:: :::.  ..::.::  . : .   ::..:. :::..::.::::. 
NP_114 DDKMEHAQKLMRLQNLRGGHICLHDIRKPECQGWESGLVAMESAFHLEKNVNQSLLDLYQ
               70        80        90       100       110       120

        120       130       140       150       160       170      
pF1KB6 LGSARTDPHLCDFLETHFLDEEVKLIKKMGDHLTNLHRLGGPEAGLGEYLFERLTLKHD 
       :.  . ::.:: :::.:.: :.:: ::..: ...::... .:::::.::::..:::    
NP_114 LAVEKGDPQLCHFLESHYLHEQVKTIKELGGYVSNLRKICSPEAGLAEYLFDKLTLGGRV
              130       140       150       160       170       180

NP_114 KET
          




175 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:56:28 2016 done: Sat Nov  5 11:56:29 2016
 Total Scan time:  5.790 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]