FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6836, 175 aa
  1>>>pF1KB6836 175 - 175 aa - 175 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8038+/-0.000763; mu= 15.8640+/- 0.046
 mean_var=69.2529+/-13.671, 0's: 0 Z-trim(108.5): 16  B-trim: 51 in 1/50
 Lambda= 0.154119
 statistics sampled from 10252 (10258) to 10252 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.315), width:  16
 Scan time:  1.980

The best scores are:                                      opt bits E(32554)
CCDS33070.1 FTL gene_id:2512|Hs108|chr19           ( 175) 1152 264.5 2.4e-71
CCDS41655.1 FTH1 gene_id:2495|Hs108|chr11          ( 183)  696 163.1 8.2e-41
CCDS4128.1 FTMT gene_id:94033|Hs108|chr5           ( 242)  654 153.9 6.5e-38
CCDS14227.1 FTHL17 gene_id:53940|Hs108|chrX        ( 183)  576 136.4 8.8e-33


>>CCDS33070.1 FTL gene_id:2512|Hs108|chr19                (175 aa)
 initn: 1152 init1: 1152 opt: 1152  Z-score: 1394.4  bits: 264.5 E(32554): 2.4e-71
Smith-Waterman score: 1152; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:1-175)

               10        20        30        40        50        60
pF1KB6 MSSQIRQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MSSQIRQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EGYERLLKMQNQRGGRALFQDIKKPAEDEWGKTPDAMKAAMALEKKLNQALLDLHALGSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EGYERLLKMQNQRGGRALFQDIKKPAEDEWGKTPDAMKAAMALEKKLNQALLDLHALGSA
               70        80        90       100       110       120

              130       140       150       160       170     
pF1KB6 RTDPHLCDFLETHFLDEEVKLIKKMGDHLTNLHRLGGPEAGLGEYLFERLTLKHD
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RTDPHLCDFLETHFLDEEVKLIKKMGDHLTNLHRLGGPEAGLGEYLFERLTLKHD
              130       140       150       160       170     

>>CCDS41655.1 FTH1 gene_id:2495|Hs108|chr11               (183 aa)
 initn: 696 init1: 696 opt: 696  Z-score: 846.2  bits: 163.1 E(32554): 8.2e-41
Smith-Waterman score: 696; 56.7% identity (86.0% similar) in 171 aa overlap (2-172:6-176)

                   10        20        30        40        50      
pF1KB6     MSSQIRQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELA
            .::.::::  : :::.:  .:: : :::.:::...:::::::::.. ...: . .
CCDS41 MTTASTSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQS
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KB6 EEKREGYERLLKMQNQRGGRALFQDIKKPAEDEWGKTPDAMKAAMALEKKLNQALLDLHA
       .:.::  :.:.:.::::::: ..::::::  :.: .  .::. :. :::..::.::.:: 
CCDS41 HEEREHAEKLMKLQNQRGGRIFLQDIKKPDCDDWESGLNAMECALHLEKNVNQSLLELHK
               70        80        90       100       110       120

        120       130       140       150       160       170      
pF1KB6 LGSARTDPHLCDFLETHFLDEEVKLIKKMGDHLTNLHRLGGPEAGLGEYLFERLTLKHD 
       :.. ..:::::::.:::.:.:.:: ::..:::.:::...:.::.::.::::.. ::    
CCDS41 LATDKNDPHLCDFIETHYLNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLGDSD
              130       140       150       160       170       180

CCDS41 NES
          

>>CCDS4128.1 FTMT gene_id:94033|Hs108|chr5                (242 aa)
 initn: 660 init1: 644 opt: 654  Z-score: 794.1  bits: 153.9 E(32554): 6.5e-38
Smith-Waterman score: 654; 54.3% identity (82.7% similar) in 173 aa overlap (3-175:66-238)

                                           10        20        30  
pF1KB6                             MSSQIRQNYSTDVEAAVNSLVNLYLQASYTYL
                                     :..:::.  : :::.:  .:: : :::.::
CCDS41 RPLDPRQIAPRRPLAAAASSRDPTGPAAGPSRVRQNFHPDSEAAINRQINLELYASYVYL
          40        50        60        70        80        90     

             40        50        60        70        80        90  
pF1KB6 SLGFYFDRDDVALEGVSHFFRELAEEKREGYERLLKMQNQRGGRALFQDIKKPAEDEWGK
       :...::.::::::.. :..: . ..:. :  :.:...:::::::  .:::::: .:.: .
CCDS41 SMAYYFSRDDVALNNFSRYFLHQSREETEHAEKLMRLQNQRGGRIRLQDIKKPEQDDWES
         100       110       120       130       140       150     

            100       110       120       130       140       150  
pF1KB6 TPDAMKAAMALEKKLNQALLDLHALGSARTDPHLCDFLETHFLDEEVKLIKKMGDHLTNL
          ::. :. :::..::.::.::::.: . ::::::::::..:.:.:: ::..:::. ::
CCDS41 GLHAMECALLLEKNVNQSLLELHALASDKGDPHLCDFLETYYLNEQVKSIKELGDHVHNL
         160       170       180       190       200       210     

            160       170         
pF1KB6 HRLGGPEAGLGEYLFERLTLKHD    
        ..:.:.:::.::::.  :: ..    
CCDS41 VKMGAPDAGLAEYLFDTHTLGNENKQN
         220       230       240  

>>CCDS14227.1 FTHL17 gene_id:53940|Hs108|chrX             (183 aa)
 initn: 576 init1: 576 opt: 576  Z-score: 702.0  bits: 136.4 E(32554): 8.8e-33
Smith-Waterman score: 576; 49.4% identity (81.8% similar) in 170 aa overlap (3-172:7-176)

                   10        20        30        40        50      
pF1KB6     MSSQIRQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELA
             ::.::.:.:. .::.:: ..: : .:: :::..:::.:::::::.  ..: .:.
CCDS14 MATAQPSQVRQKYDTNCDAAINSHITLELYTSYLYLSMAFYFNRDDVALENFFRYFLRLS
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KB6 EEKREGYERLLKMQNQRGGRALFQDIKKPAEDEWGKTPDAMKAAMALEKKLNQALLDLHA
       ..: :  ..:...:: :::.  ..::.::  . : .   ::..:. :::..::.::::. 
CCDS14 DDKMEHAQKLMRLQNLRGGHICLHDIRKPECQGWESGLVAMESAFHLEKNVNQSLLDLYQ
               70        80        90       100       110       120

        120       130       140       150       160       170      
pF1KB6 LGSARTDPHLCDFLETHFLDEEVKLIKKMGDHLTNLHRLGGPEAGLGEYLFERLTLKHD 
       :.  . ::.:: :::.:.: :.:: ::..: ...::... .:::::.::::..:::    
CCDS14 LAVEKGDPQLCHFLESHYLHEQVKTIKELGGYVSNLRKICSPEAGLAEYLFDKLTLGGRV
              130       140       150       160       170       180

CCDS14 KET
          




175 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:56:27 2016 done: Sat Nov  5 11:56:28 2016
 Total Scan time:  1.980 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]