FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6832, 189 aa
  1>>>pF1KB6832 189 - 189 aa - 189 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3510+/-0.000356; mu= 12.2123+/- 0.022
 mean_var=63.2346+/-12.805, 0's: 0 Z-trim(113.8): 5  B-trim: 396 in 1/55
 Lambda= 0.161286
 statistics sampled from 23276 (23279) to 23276 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.669), E-opt: 0.2 (0.273), width:  16
 Scan time:  4.340

The best scores are:                                      opt bits E(85289)
NP_001116849 (OMIM: 602533,606324) protein deglyca ( 189) 1203 288.4 4.7e-78
NP_009193 (OMIM: 602533,606324) protein deglycase  ( 189) 1203 288.4 4.7e-78
XP_005263481 (OMIM: 602533,606324) PREDICTED: prot ( 189) 1203 288.4 4.7e-78


>>NP_001116849 (OMIM: 602533,606324) protein deglycase D  (189 aa)
 initn: 1203 init1: 1203 opt: 1203  Z-score: 1522.3  bits: 288.4 E(85289): 4.7e-78
Smith-Waterman score: 1203; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB6 MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 AKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQ
              130       140       150       160       170       180

                
pF1KB6 VKAPLVLKD
       :::::::::
NP_001 VKAPLVLKD
                

>>NP_009193 (OMIM: 602533,606324) protein deglycase DJ-1  (189 aa)
 initn: 1203 init1: 1203 opt: 1203  Z-score: 1522.3  bits: 288.4 E(85289): 4.7e-78
Smith-Waterman score: 1203; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB6 MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 AKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 AKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 SKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQ
              130       140       150       160       170       180

                
pF1KB6 VKAPLVLKD
       :::::::::
NP_009 VKAPLVLKD
                

>>XP_005263481 (OMIM: 602533,606324) PREDICTED: protein   (189 aa)
 initn: 1203 init1: 1203 opt: 1203  Z-score: 1522.3  bits: 288.4 E(85289): 4.7e-78
Smith-Waterman score: 1203; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB6 MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 AKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQ
              130       140       150       160       170       180

                
pF1KB6 VKAPLVLKD
       :::::::::
XP_005 VKAPLVLKD
                




189 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:22:10 2016 done: Sat Nov  5 00:22:10 2016
 Total Scan time:  4.340 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]