FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6832, 189 aa
  1>>>pF1KB6832 189 - 189 aa - 189 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0949+/-0.000796; mu= 13.4683+/- 0.048
 mean_var=57.3935+/-11.171, 0's: 0 Z-trim(106.8): 19  B-trim: 490 in 1/50
 Lambda= 0.169294
 statistics sampled from 9179 (9181) to 9179 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.282), width:  16
 Scan time:  1.470

The best scores are:                                      opt bits E(32554)
CCDS93.1 PARK7 gene_id:11315|Hs108|chr1            ( 189) 1203 301.8 1.6e-82


>>CCDS93.1 PARK7 gene_id:11315|Hs108|chr1                 (189 aa)
 initn: 1203 init1: 1203 opt: 1203  Z-score: 1594.8  bits: 301.8 E(32554): 1.6e-82
Smith-Waterman score: 1203; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB6 MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 AKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 AKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 SKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQ
              130       140       150       160       170       180

                
pF1KB6 VKAPLVLKD
       :::::::::
CCDS93 VKAPLVLKD
                




189 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:22:09 2016 done: Sat Nov  5 00:22:09 2016
 Total Scan time:  1.470 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]