FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6806, 184 aa
  1>>>pF1KB6806 184 - 184 aa - 184 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0133+/-0.0003; mu= 15.3860+/- 0.019
 mean_var=69.5469+/-13.757, 0's: 0 Z-trim(117.4): 7  B-trim: 17 in 1/54
 Lambda= 0.153793
 statistics sampled from 29451 (29458) to 29451 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.345), width:  16
 Scan time:  5.700

The best scores are:                                      opt bits E(85289)
NP_004100 (OMIM: 103260) adrenodoxin, mitochondria ( 184) 1198 274.0 9.5e-74
NP_001026904 (OMIM: 614585) adrenodoxin-like prote ( 186)  314 77.9 1.1e-14


>>NP_004100 (OMIM: 103260) adrenodoxin, mitochondrial pr  (184 aa)
 initn: 1198 init1: 1198 opt: 1198  Z-score: 1445.0  bits: 274.0 E(85289): 9.5e-74
Smith-Waterman score: 1198; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184)

               10        20        30        40        50        60
pF1KB6 MAAAGGARLLRAASAVLGGPAGRWLHHAGSRAGSSGLLRNRGPGGSAEASRSLSVSARAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MAAAGGARLLRAASAVLGGPAGRWLHHAGSRAGSSGLLRNRGPGGSAEASRSLSVSARAR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SSSEDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SSSEDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 DHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVADARQSIDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVADARQSIDV
              130       140       150       160       170       180

           
pF1KB6 GKTS
       ::::
NP_004 GKTS
           

>>NP_001026904 (OMIM: 614585) adrenodoxin-like protein,   (186 aa)
 initn: 253 init1: 196 opt: 314  Z-score: 384.9  bits: 77.9 E(85289): 1.1e-14
Smith-Waterman score: 314; 34.7% identity (64.2% similar) in 173 aa overlap (3-169:5-171)

                 10        20        30             40        50   
pF1KB6   MAAAGGARLLRAASAVLGGPAGRWLHHAGSRAGSS-----GLLRNRGPGGSAEASRSL
           ::. ::   .: ..: .  : : .. :. .::.     :  :.    ::  :..  
NP_001 MHVMAASMARGGVSARVLLQAARGTWWNRPGGTSGSGEGVALGTTRKFQATGSRPAGEE-
               10        20        30        40        50          

            60        70        80        90       100       110   
pF1KB6 SVSARARSSSEDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACS
         .: .     : ..: :..:.:. . ..:.:::..: .. ....:..  ::::..::::
NP_001 --DAGGPERPGDVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLE--GACEASLACS
        60        70        80        90       100         110     

            120       130       140       150       160       170  
pF1KB6 TCHL-IFEDHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVA
       :::. . :::. . :    ..:.::::.:  : . ::::::: ::  ...    .:.   
NP_001 TCHVYVSEDHL-DLLPPPEEREDDMLDMAPLLQENSRLGCQIVLTPELEGAEFTLPKITR
         120        130       140       150       160       170    

            180    
pF1KB6 DARQSIDVGKTS
                   
NP_001 NFYVDGHVPKPH
          180      




184 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:14:15 2016 done: Sat Nov  5 00:14:16 2016
 Total Scan time:  5.700 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]