FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6806, 184 aa
  1>>>pF1KB6806 184 - 184 aa - 184 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3745+/-0.000689; mu= 13.2243+/- 0.042
 mean_var=71.7184+/-14.218, 0's: 0 Z-trim(110.6): 8  B-trim: 0 in 0/52
 Lambda= 0.151446
 statistics sampled from 11760 (11763) to 11760 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.731), E-opt: 0.2 (0.361), width:  16
 Scan time:  1.940

The best scores are:                                      opt bits E(32554)
CCDS8344.1 FDX1 gene_id:2230|Hs108|chr11           ( 184) 1198 270.1 5.5e-73
CCDS32905.2 FDX1L gene_id:112812|Hs108|chr19       ( 186)  314 76.9 7.7e-15


>>CCDS8344.1 FDX1 gene_id:2230|Hs108|chr11                (184 aa)
 initn: 1198 init1: 1198 opt: 1198  Z-score: 1423.9  bits: 270.1 E(32554): 5.5e-73
Smith-Waterman score: 1198; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184)

               10        20        30        40        50        60
pF1KB6 MAAAGGARLLRAASAVLGGPAGRWLHHAGSRAGSSGLLRNRGPGGSAEASRSLSVSARAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MAAAGGARLLRAASAVLGGPAGRWLHHAGSRAGSSGLLRNRGPGGSAEASRSLSVSARAR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SSSEDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 SSSEDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 DHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVADARQSIDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 DHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVADARQSIDV
              130       140       150       160       170       180

           
pF1KB6 GKTS
       ::::
CCDS83 GKTS
           

>>CCDS32905.2 FDX1L gene_id:112812|Hs108|chr19            (186 aa)
 initn: 253 init1: 196 opt: 314  Z-score: 379.9  bits: 76.9 E(32554): 7.7e-15
Smith-Waterman score: 314; 34.7% identity (64.2% similar) in 173 aa overlap (3-169:5-171)

                 10        20        30             40        50   
pF1KB6   MAAAGGARLLRAASAVLGGPAGRWLHHAGSRAGSS-----GLLRNRGPGGSAEASRSL
           ::. ::   .: ..: .  : : .. :. .::.     :  :.    ::  :..  
CCDS32 MHVMAASMARGGVSARVLLQAARGTWWNRPGGTSGSGEGVALGTTRKFQATGSRPAGEE-
               10        20        30        40        50          

            60        70        80        90       100       110   
pF1KB6 SVSARARSSSEDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACS
         .: .     : ..: :..:.:. . ..:.:::..: .. ....:..  ::::..::::
CCDS32 --DAGGPERPGDVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLE--GACEASLACS
        60        70        80        90       100         110     

            120       130       140       150       160       170  
pF1KB6 TCHL-IFEDHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVA
       :::. . :::. . :    ..:.::::.:  : . ::::::: ::  ...    .:.   
CCDS32 TCHVYVSEDHL-DLLPPPEEREDDMLDMAPLLQENSRLGCQIVLTPELEGAEFTLPKITR
         120        130       140       150       160       170    

            180    
pF1KB6 DARQSIDVGKTS
                   
CCDS32 NFYVDGHVPKPH
          180      




184 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:14:15 2016 done: Sat Nov  5 00:14:15 2016
 Total Scan time:  1.940 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]