FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6801, 158 aa
  1>>>pF1KB6801 158 - 158 aa - 158 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9268+/-0.000713; mu= 9.8929+/- 0.043
 mean_var=86.0196+/-17.504, 0's: 0 Z-trim(110.9): 6  B-trim: 212 in 1/52
 Lambda= 0.138285
 statistics sampled from 11935 (11938) to 11935 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.367), width:  16
 Scan time:  1.950

The best scores are:                                      opt bits E(32554)
CCDS7285.1 SRGN gene_id:5552|Hs108|chr10           ( 158) 1057 219.8 5.5e-58


>>CCDS7285.1 SRGN gene_id:5552|Hs108|chr10                (158 aa)
 initn: 1057 init1: 1057 opt: 1057  Z-score: 1154.5  bits: 219.8 E(32554): 5.5e-58
Smith-Waterman score: 1057; 99.4% identity (100.0% similar) in 158 aa overlap (1-158:1-158)

               10        20        30        40        50        60
pF1KB6 MMQKLLKCSRLVLALALILVLESSVQGYPTQRARYQWVRCNPDSNSANCLEEKGPMFELL
       ::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
CCDS72 MMQKLLKCSRLVLALALILVLESSVQGYPTRRARYQWVRCNPDSNSANCLEEKGPMFELL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PGESNKIPRLRTDLFPKTRIQDLNRIFPLSEDYSGSGFGSGSGSGSGSGSGFLTEMEQDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 PGESNKIPRLRTDLFPKTRIQDLNRIFPLSEDYSGSGFGSGSGSGSGSGSGFLTEMEQDY
               70        80        90       100       110       120

              130       140       150        
pF1KB6 QLVDESDAFHDNLRSLDRNLPSDSQDLGQHGLEEDFML
       ::::::::::::::::::::::::::::::::::::::
CCDS72 QLVDESDAFHDNLRSLDRNLPSDSQDLGQHGLEEDFML
              130       140       150        




158 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:06:50 2016 done: Sat Nov  5 04:06:50 2016
 Total Scan time:  1.950 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]