Result of FASTA (omim) for
pF1KB6796
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6796, 156 aa
1>>>pF1KB6796 156 - 156 aa - 156 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5864+/-0.000282; mu= 11.6097+/- 0.018
mean_var=80.2983+/-16.553, 0's: 0 Z-trim(118.8): 97 B-trim: 0 in 0/50
Lambda= 0.143127
statistics sampled from 32095 (32216) to 32095 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.378), width: 16
Scan time: 5.530
The best scores are: opt bits E(85289)
NP_001170884 (OMIM: 191343) ubiquitin-40S ribosoma ( 156) 1049 225.2 3.4e-59
NP_002945 (OMIM: 191343) ubiquitin-40S ribosomal p ( 156) 1049 225.2 3.4e-59
NP_001129064 (OMIM: 191343) ubiquitin-40S ribosoma ( 156) 1049 225.2 3.4e-59
NP_001307949 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 481 107.8 5.8e-24
NP_001307946 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 481 107.8 5.8e-24
NP_001307948 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 481 107.8 5.8e-24
NP_001029102 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 481 107.8 5.8e-24
NP_003324 (OMIM: 191321) ubiquitin-60S ribosomal p ( 128) 481 107.8 5.8e-24
NP_001307947 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 481 107.8 5.8e-24
NP_001307950 (OMIM: 191321) ubiquitin-60S ribosoma ( 135) 481 107.9 6.1e-24
XP_005260110 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 156) 481 107.9 6.8e-24
XP_005260109 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 156) 481 107.9 6.8e-24
XP_005260111 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 156) 481 107.9 6.8e-24
XP_006722934 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 156) 481 107.9 6.8e-24
NP_001268645 (OMIM: 119540,191339) polyubiquitin-B ( 229) 482 108.2 8e-24
NP_001268647 (OMIM: 119540,191339) polyubiquitin-B ( 229) 482 108.2 8e-24
NP_001268649 (OMIM: 119540,191339) polyubiquitin-B ( 229) 482 108.2 8e-24
NP_001268648 (OMIM: 119540,191339) polyubiquitin-B ( 229) 482 108.2 8e-24
NP_061828 (OMIM: 119540,191339) polyubiquitin-B pr ( 229) 482 108.2 8e-24
NP_001268646 (OMIM: 119540,191339) polyubiquitin-B ( 229) 482 108.2 8e-24
XP_016882687 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 203) 481 108.0 8.4e-24
NP_066289 (OMIM: 191340) polyubiquitin-C [Homo sap ( 685) 482 108.5 1.9e-23
NP_006147 (OMIM: 603171) NEDD8 precursor [Homo sap ( 81) 307 71.8 2.6e-13
NP_001307951 (OMIM: 191321) ubiquitin-60S ribosoma ( 99) 218 53.5 1.1e-07
NP_055050 (OMIM: 312070) ubiquitin-like protein 4A ( 157) 197 49.3 3.1e-06
NP_001988 (OMIM: 134690) ubiquitin-like protein fu ( 133) 173 44.3 8.4e-05
NP_005092 (OMIM: 147571,616126) ubiquitin-like pro ( 165) 170 43.7 0.00015
NP_981957 (OMIM: 611127) ubiquitin-like protein 4B ( 174) 164 42.5 0.00038
NP_054642 (OMIM: 167000,211980,600116,602544,60757 ( 437) 162 42.3 0.001
XP_011534165 (OMIM: 167000,211980,600116,602544,60 ( 464) 162 42.4 0.0011
NP_004553 (OMIM: 167000,211980,600116,602544,60757 ( 465) 162 42.4 0.0011
NP_005868 (OMIM: 605595) splicing factor 3A subuni ( 793) 164 42.9 0.0013
NP_001248754 (OMIM: 603281) 2'-5'-oligoadenylate s ( 384) 159 41.7 0.0015
NP_006389 (OMIM: 606050) ubiquitin D [Homo sapiens ( 165) 154 40.4 0.0015
XP_016866397 (OMIM: 167000,211980,600116,602544,60 ( 503) 159 41.8 0.0018
NP_003724 (OMIM: 603281) 2'-5'-oligoadenylate synt ( 514) 159 41.8 0.0018
XP_011526244 (OMIM: 607990) PREDICTED: E3 ubiquiti ( 758) 160 42.1 0.0022
NP_001276981 (OMIM: 607990) E3 ubiquitin-protein l ( 793) 160 42.1 0.0022
NP_001041666 (OMIM: 607990) E3 ubiquitin-protein l ( 793) 160 42.1 0.0022
NP_001276979 (OMIM: 607990) E3 ubiquitin-protein l ( 793) 160 42.1 0.0022
NP_001276980 (OMIM: 607990) E3 ubiquitin-protein l ( 793) 160 42.1 0.0022
NP_037414 (OMIM: 607990) E3 ubiquitin-protein liga ( 806) 160 42.1 0.0023
NP_002865 (OMIM: 600062) UV excision repair protei ( 409) 156 41.1 0.0023
XP_016869742 (OMIM: 615211) PREDICTED: E3 ubiquiti ( 729) 159 41.9 0.0024
NP_690856 (OMIM: 615211) E3 ubiquitin-protein liga ( 802) 159 41.9 0.0026
NP_079230 (OMIM: 616388) ubiquitin domain-containi ( 227) 146 38.8 0.0061
>>NP_001170884 (OMIM: 191343) ubiquitin-40S ribosomal pr (156 aa)
initn: 1049 init1: 1049 opt: 1049 Z-score: 1183.8 bits: 225.2 E(85289): 3.4e-59
Smith-Waterman score: 1049; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:1-156)
10 20 30 40 50 60
pF1KB6 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE
70 80 90 100 110 120
130 140 150
pF1KB6 CPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK
::::::::::::::::::::::::::::::::::::
NP_001 CPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK
130 140 150
>>NP_002945 (OMIM: 191343) ubiquitin-40S ribosomal prote (156 aa)
initn: 1049 init1: 1049 opt: 1049 Z-score: 1183.8 bits: 225.2 E(85289): 3.4e-59
Smith-Waterman score: 1049; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:1-156)
10 20 30 40 50 60
pF1KB6 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE
70 80 90 100 110 120
130 140 150
pF1KB6 CPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK
::::::::::::::::::::::::::::::::::::
NP_002 CPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK
130 140 150
>>NP_001129064 (OMIM: 191343) ubiquitin-40S ribosomal pr (156 aa)
initn: 1049 init1: 1049 opt: 1049 Z-score: 1183.8 bits: 225.2 E(85289): 3.4e-59
Smith-Waterman score: 1049; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:1-156)
10 20 30 40 50 60
pF1KB6 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE
70 80 90 100 110 120
130 140 150
pF1KB6 CPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK
::::::::::::::::::::::::::::::::::::
NP_001 CPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK
130 140 150
>>NP_001307949 (OMIM: 191321) ubiquitin-60S ribosomal pr (128 aa)
initn: 507 init1: 481 opt: 481 Z-score: 551.2 bits: 107.8 E(85289): 5.8e-24
Smith-Waterman score: 481; 100.0% identity (100.0% similar) in 76 aa overlap (1-76:1-76)
10 20 30 40 50 60
pF1KB6 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE
::::::::::::::::
NP_001 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
70 80 90 100 110 120
>>NP_001307946 (OMIM: 191321) ubiquitin-60S ribosomal pr (128 aa)
initn: 507 init1: 481 opt: 481 Z-score: 551.2 bits: 107.8 E(85289): 5.8e-24
Smith-Waterman score: 481; 100.0% identity (100.0% similar) in 76 aa overlap (1-76:1-76)
10 20 30 40 50 60
pF1KB6 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE
::::::::::::::::
NP_001 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
70 80 90 100 110 120
>>NP_001307948 (OMIM: 191321) ubiquitin-60S ribosomal pr (128 aa)
initn: 507 init1: 481 opt: 481 Z-score: 551.2 bits: 107.8 E(85289): 5.8e-24
Smith-Waterman score: 481; 100.0% identity (100.0% similar) in 76 aa overlap (1-76:1-76)
10 20 30 40 50 60
pF1KB6 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE
::::::::::::::::
NP_001 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
70 80 90 100 110 120
>>NP_001029102 (OMIM: 191321) ubiquitin-60S ribosomal pr (128 aa)
initn: 507 init1: 481 opt: 481 Z-score: 551.2 bits: 107.8 E(85289): 5.8e-24
Smith-Waterman score: 481; 100.0% identity (100.0% similar) in 76 aa overlap (1-76:1-76)
10 20 30 40 50 60
pF1KB6 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE
::::::::::::::::
NP_001 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
70 80 90 100 110 120
>>NP_003324 (OMIM: 191321) ubiquitin-60S ribosomal prote (128 aa)
initn: 507 init1: 481 opt: 481 Z-score: 551.2 bits: 107.8 E(85289): 5.8e-24
Smith-Waterman score: 481; 100.0% identity (100.0% similar) in 76 aa overlap (1-76:1-76)
10 20 30 40 50 60
pF1KB6 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE
::::::::::::::::
NP_003 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
70 80 90 100 110 120
>>NP_001307947 (OMIM: 191321) ubiquitin-60S ribosomal pr (128 aa)
initn: 507 init1: 481 opt: 481 Z-score: 551.2 bits: 107.8 E(85289): 5.8e-24
Smith-Waterman score: 481; 100.0% identity (100.0% similar) in 76 aa overlap (1-76:1-76)
10 20 30 40 50 60
pF1KB6 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE
::::::::::::::::
NP_001 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
70 80 90 100 110 120
>>NP_001307950 (OMIM: 191321) ubiquitin-60S ribosomal pr (135 aa)
initn: 496 init1: 481 opt: 481 Z-score: 550.8 bits: 107.9 E(85289): 6.1e-24
Smith-Waterman score: 481; 100.0% identity (100.0% similar) in 76 aa overlap (1-76:8-83)
10 20 30 40 50
pF1KB6 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMPKDANMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 RTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGK
:::::::::::::::::::::::
NP_001 RTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKK
70 80 90 100 110 120
156 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:04:09 2016 done: Sat Nov 5 04:04:10 2016
Total Scan time: 5.530 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]