Result of FASTA (ccds) for
pF1KB6796
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6796, 156 aa
1>>>pF1KB6796 156 - 156 aa - 156 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7148+/-0.00065; mu= 10.8414+/- 0.039
mean_var=76.8564+/-15.228, 0's: 0 Z-trim(111.9): 41 B-trim: 0 in 0/51
Lambda= 0.146297
statistics sampled from 12726 (12768) to 12726 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.392), width: 16
Scan time: 1.910
The best scores are: opt bits E(32554)
CCDS33202.1 RPS27A gene_id:6233|Hs108|chr2 ( 156) 1049 229.8 5.4e-61
CCDS12382.1 UBA52 gene_id:7311|Hs108|chr19 ( 128) 481 109.8 5.6e-25
CCDS11177.1 UBB gene_id:7314|Hs108|chr17 ( 229) 482 110.2 7.8e-25
CCDS9260.1 UBC gene_id:7316|Hs108|chr12 ( 685) 482 110.5 2e-24
CCDS9621.1 NEDD8 gene_id:4738|Hs108|chr14 ( 81) 307 73.0 4.3e-14
>>CCDS33202.1 RPS27A gene_id:6233|Hs108|chr2 (156 aa)
initn: 1049 init1: 1049 opt: 1049 Z-score: 1208.6 bits: 229.8 E(32554): 5.4e-61
Smith-Waterman score: 1049; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:1-156)
10 20 30 40 50 60
pF1KB6 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE
70 80 90 100 110 120
130 140 150
pF1KB6 CPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK
::::::::::::::::::::::::::::::::::::
CCDS33 CPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK
130 140 150
>>CCDS12382.1 UBA52 gene_id:7311|Hs108|chr19 (128 aa)
initn: 507 init1: 481 opt: 481 Z-score: 562.0 bits: 109.8 E(32554): 5.6e-25
Smith-Waterman score: 481; 100.0% identity (100.0% similar) in 76 aa overlap (1-76:1-76)
10 20 30 40 50 60
pF1KB6 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE
::::::::::::::::
CCDS12 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
70 80 90 100 110 120
>>CCDS11177.1 UBB gene_id:7314|Hs108|chr17 (229 aa)
initn: 950 init1: 482 opt: 482 Z-score: 559.3 bits: 110.2 E(32554): 7.8e-25
Smith-Waterman score: 482; 97.4% identity (98.7% similar) in 78 aa overlap (1-78:77-154)
10 20 30
pF1KB6 MQIFVKTLTGKTITLEVEPSDTIENVKAKI
::::::::::::::::::::::::::::::
CCDS11 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI
50 60 70 80 90 100
40 50 60 70 80 90
pF1KB6 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKK
:::::::::::::::::::::::::::::::::::::::::::::: .
CCDS11 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
110 120 130 140 150 160
100 110 120 130 140 150
pF1KB6 NKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCF
CCDS11 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
170 180 190 200 210 220
>--
initn: 481 init1: 481 opt: 481 Z-score: 558.2 bits: 110.0 E(32554): 9e-25
Smith-Waterman score: 481; 100.0% identity (100.0% similar) in 76 aa overlap (1-76:1-76)
10 20 30 40 50 60
pF1KB6 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE
::::::::::::::::
CCDS11 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
70 80 90 100 110 120
>--
initn: 467 init1: 467 opt: 467 Z-score: 542.2 bits: 107.0 E(32554): 7e-24
Smith-Waterman score: 467; 100.0% identity (100.0% similar) in 74 aa overlap (3-76:155-228)
10 20 30
pF1KB6 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD
::::::::::::::::::::::::::::::
CCDS11 QLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQD
130 140 150 160 170 180
40 50 60 70 80 90
pF1KB6 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNK
::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
190 200 210 220
100 110 120 130 140 150
pF1KB6 HKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK
>>CCDS9260.1 UBC gene_id:7316|Hs108|chr12 (685 aa)
initn: 3758 init1: 482 opt: 482 Z-score: 552.2 bits: 110.5 E(32554): 2e-24
Smith-Waterman score: 482; 97.4% identity (98.7% similar) in 78 aa overlap (1-78:77-154)
10 20 30
pF1KB6 MQIFVKTLTGKTITLEVEPSDTIENVKAKI
::::::::::::::::::::::::::::::
CCDS92 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI
50 60 70 80 90 100
40 50 60 70 80 90
pF1KB6 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKK
:::::::::::::::::::::::::::::::::::::::::::::: .
CCDS92 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
110 120 130 140 150 160
100 110 120 130 140 150
pF1KB6 NKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCF
CCDS92 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
170 180 190 200 210 220
>--
initn: 2808 init1: 482 opt: 482 Z-score: 552.2 bits: 110.5 E(32554): 2e-24
Smith-Waterman score: 482; 97.4% identity (98.7% similar) in 78 aa overlap (1-78:305-382)
10 20 30
pF1KB6 MQIFVKTLTGKTITLEVEPSDTIENVKAKI
::::::::::::::::::::::::::::::
CCDS92 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI
280 290 300 310 320 330
40 50 60 70 80 90
pF1KB6 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKK
:::::::::::::::::::::::::::::::::::::::::::::: .
CCDS92 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
340 350 360 370 380 390
100 110 120 130 140 150
pF1KB6 NKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCF
CCDS92 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
400 410 420 430 440 450
>--
initn: 1415 init1: 482 opt: 482 Z-score: 552.2 bits: 110.5 E(32554): 2e-24
Smith-Waterman score: 482; 97.4% identity (98.7% similar) in 78 aa overlap (1-78:457-534)
10 20 30
pF1KB6 MQIFVKTLTGKTITLEVEPSDTIENVKAKI
::::::::::::::::::::::::::::::
CCDS92 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI
430 440 450 460 470 480
40 50 60 70 80 90
pF1KB6 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKK
:::::::::::::::::::::::::::::::::::::::::::::: .
CCDS92 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
490 500 510 520 530 540
100 110 120 130 140 150
pF1KB6 NKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCF
CCDS92 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
550 560 570 580 590 600
>--
initn: 481 init1: 481 opt: 481 Z-score: 551.0 bits: 110.2 E(32554): 2.3e-24
Smith-Waterman score: 481; 100.0% identity (100.0% similar) in 76 aa overlap (1-76:609-684)
10 20 30
pF1KB6 MQIFVKTLTGKTITLEVEPSDTIENVKAKI
::::::::::::::::::::::::::::::
CCDS92 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI
580 590 600 610 620 630
40 50 60 70 80 90
pF1KB6 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKK
::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGV
640 650 660 670 680
100 110 120 130 140 150
pF1KB6 NKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCF
>--
initn: 481 init1: 481 opt: 481 Z-score: 551.0 bits: 110.2 E(32554): 2.3e-24
Smith-Waterman score: 481; 100.0% identity (100.0% similar) in 76 aa overlap (1-76:229-304)
10 20 30
pF1KB6 MQIFVKTLTGKTITLEVEPSDTIENVKAKI
::::::::::::::::::::::::::::::
CCDS92 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI
200 210 220 230 240 250
40 50 60 70 80 90
pF1KB6 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKK
::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
260 270 280 290 300 310
100 110 120 130 140 150
pF1KB6 NKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCF
CCDS92 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
320 330 340 350 360 370
>--
initn: 481 init1: 481 opt: 481 Z-score: 551.0 bits: 110.2 E(32554): 2.3e-24
Smith-Waterman score: 481; 100.0% identity (100.0% similar) in 76 aa overlap (1-76:1-76)
10 20 30 40 50 60
pF1KB6 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE
::::::::::::::::
CCDS92 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
70 80 90 100 110 120
>--
initn: 467 init1: 467 opt: 467 Z-score: 535.1 bits: 107.3 E(32554): 1.8e-23
Smith-Waterman score: 467; 100.0% identity (100.0% similar) in 74 aa overlap (3-76:155-228)
10 20 30
pF1KB6 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD
::::::::::::::::::::::::::::::
CCDS92 QLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQD
130 140 150 160 170 180
40 50 60 70 80 90
pF1KB6 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNK
::::::::::::::::::::::::::::::::::::::::::::
CCDS92 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE
190 200 210 220 230 240
100 110 120 130 140 150
pF1KB6 HKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK
CCDS92 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
250 260 270 280 290 300
>--
initn: 467 init1: 467 opt: 467 Z-score: 535.1 bits: 107.3 E(32554): 1.8e-23
Smith-Waterman score: 467; 100.0% identity (100.0% similar) in 74 aa overlap (3-76:535-608)
10 20 30
pF1KB6 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD
::::::::::::::::::::::::::::::
CCDS92 QLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQD
510 520 530 540 550 560
40 50 60 70 80 90
pF1KB6 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNK
::::::::::::::::::::::::::::::::::::::::::::
CCDS92 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE
570 580 590 600 610 620
100 110 120 130 140 150
pF1KB6 HKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK
CCDS92 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
630 640 650 660 670 680
>--
initn: 467 init1: 467 opt: 467 Z-score: 535.1 bits: 107.3 E(32554): 1.8e-23
Smith-Waterman score: 467; 100.0% identity (100.0% similar) in 74 aa overlap (3-76:383-456)
10 20 30
pF1KB6 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD
::::::::::::::::::::::::::::::
CCDS92 QLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQD
360 370 380 390 400 410
40 50 60 70 80 90
pF1KB6 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNK
::::::::::::::::::::::::::::::::::::::::::::
CCDS92 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE
420 430 440 450 460 470
100 110 120 130 140 150
pF1KB6 HKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK
CCDS92 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
480 490 500 510 520 530
>>CCDS9621.1 NEDD8 gene_id:4738|Hs108|chr14 (81 aa)
initn: 313 init1: 303 opt: 307 Z-score: 366.5 bits: 73.0 E(32554): 4.3e-14
Smith-Waterman score: 307; 55.6% identity (81.5% similar) in 81 aa overlap (1-81:1-81)
10 20 30 40 50 60
pF1KB6 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
: : ::::::: : ...::.: .: .: ....::::::.:::::..:::..: .: .::.
CCDS96 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE
: :.::::: ::::. :.
CCDS96 ILGGSVLHLVLALRGGGGLRQ
70 80
156 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:04:08 2016 done: Sat Nov 5 04:04:09 2016
Total Scan time: 1.910 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]