Restriction map for
pF1KB6793
(Circular) (Six-base) MAPSORT of: pF1KB6793.seq Check: 3947 from: 1 to: 3494
pF1KB6793 3494 bp
With 182 enzymes: SgfI *
June 26, 2008 10:48 ..
AccI GT'mk_AC
Cuts at: 532 532
Size: 3494
Acc65I G'GTAC_C
Cuts at: 510 510
Size: 3494
AclI AA'CG_TT
Cuts at: 3334 3334
Size: 3494
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1319 1751 2498 2766 1319
Size: 432 747 268 2047
Fragments arranged by size:
2047 747 432 268
AflIII A'CryG_T
Cuts at: 846 1950 2927 846
Size: 1104 977 1413
Fragments arranged by size:
1413 1104 977
AgeI A'CCGG_T
Cuts at: 1882 1882
Size: 3494
AlwNI CAG_nnn'CTG
Cuts at: 799 2366 799
Size: 1567 1927
ApaLI G'TGCA_C
Cuts at: 2264 2264
Size: 3494
ApoI r'AATT_y
Cuts at: 498 2847 3103 498
Size: 2349 256 889
Fragments arranged by size:
2349 889 256
AseI AT'TA_AT
Cuts at: 20 20
Size: 3494
AsiSI GCG_AT'CGC
Cuts at: 104 104
Size: 3494
AvaI C'yCGr_G
Cuts at: 514 514
Size: 3494
BamHI G'GATC_C
Cuts at: 519 519
Size: 3494
BanI G'GyrC_C
Cuts at: 510 924 1172 1207 510
Size: 414 248 35 2797
Fragments arranged by size:
2797 414 248 35
BanII G_rGCy'C
Cuts at: 508 1538 508
Size: 1030 2464
BbeI G_GCGC'C
Cuts at: 928 1176 928
Size: 248 3246
BbsI GAAGACnn'nnnn_
Cuts at: 108 208 286 108
Size: 100 78 3316
Fragments arranged by size:
3316 100 78
BciVI GTATCCnnnnn_n'
Cuts at: 1392 2153 3494 1392
Size: 761 1341 1392
Fragments arranged by size:
1392 1341 761
BclI T'GATC_A
Cuts at: 1014 1014
Size: 3494
BglII A'GATC_T
Cuts at: 1009 3046 1009
Size: 2037 1457
BlpI GC'TnA_GC
Cuts at: 606 606
Size: 3494
Bme1580I G_kGCm'C
Cuts at: 1119 1212 2268 1119
Size: 93 1056 2345
Fragments arranged by size:
2345 1056 93
BmrI ACTGGGnnnn_n'
Cuts at: 706 787 1122 3266 706
Size: 81 335 2144 934
Fragments arranged by size:
2144 934 335 81
BplI GAGnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 1861 1861
Size: 3494
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 426 670 1549 2041 2339 426
Size: 244 879 492 298 1581
Fragments arranged by size:
1581 879 492 298 244
BsaI GGTCTCn'nnnn_
Cuts at: 3198 3198
Size: 3494
BsaAI yAC'GTr
Cuts at: 847 847
Size: 3494
BsaBI GATnn'nnATC
Cuts at: 6 1008 3045 6
Size: 1002 2037 455
Fragments arranged by size:
2037 1002 455
BsaHI Gr'CG_yC
Cuts at: 925 1173 1875 3371 925
Size: 248 702 1496 1048
Fragments arranged by size:
1496 1048 702 248
BsaWI w'CCGG_w
Cuts at: 683 1204 1882 2156 2303 2714 683
Size: 521 678 274 147 411 1463
Fragments arranged by size:
1463 678 521 411 274 147
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 370 481 370
Size: 111 3383
BseYI C'CCAG_C
Cuts at: 919 1677 2254 2750 919
Size: 758 577 496 1663
Fragments arranged by size:
1663 758 577 496
BsiEI CG_ry'CG
Cuts at: 104 1036 1082 2290 104
Size: 932 46 1208 1308
Fragments arranged by size:
1308 1208 932 46
BsiHKAI G_wGCw'C
Cuts at: 508 1286 1476 2268 508
Size: 778 190 792 1734
Fragments arranged by size:
1734 792 778 190
BsmBI CGTCTCn'nnnn_
Cuts at: 479 479
Size: 3494
Bsp1286I G_dGCh'C
Cuts at: 508 1119 1212 1286 1476 1538 2268 508
Size: 611 93 74 190 62 730 1734
Fragments arranged by size:
1734 730 611 190 93 74 62
BspEI T'CCGG_A
Cuts at: 2714 2714
Size: 3494
BspHI T'CATG_A
Cuts at: 2670 2670
Size: 3494
BspMI ACCTGCnnnn'nnnn_
Cuts at: 544 758 1060 1441 544
Size: 214 302 381 2597
Fragments arranged by size:
2597 381 302 214
BsrBI CCG'CTC
Cuts at: 50 1786 1840 3324 3489 50
Size: 1736 54 1484 165 55
Fragments arranged by size:
1736 1484 165 55 54
BsrDI GCAATG_nn'
Cuts at: 1406 1406
Size: 3494
BsrFI r'CCGG_y
Cuts at: 1492 1673 1882 1492
Size: 181 209 3104
Fragments arranged by size:
3104 209 181
BsrGI T'GTAC_A
Cuts at: 252 252
Size: 3494
BssSI C'ACGA_G
Cuts at: 1765 2123 1765
Size: 358 3136
BstAPI GCAn_nnn'nTGC
Cuts at: 871 871
Size: 3494
BstBI TT'CG_AA
Cuts at: 1855 1855
Size: 3494
BstEII G'GTnAC_C
Cuts at: 375 375
Size: 3494
BstXI CCAn_nnnn'nTGG
Cuts at: 351 351
Size: 3494
BstYI r'GATC_y
Cuts at: 1 519 986 1009 1344 1590 2602 2688 2700
Size: 518 467 23 335 246 1012 86 12
Cuts at: 2700 3046 1
Size: 346 449
Fragments arranged by size:
1012 518 467 449 346 335 246 86
23 12
BtgI C'CryG_G
Cuts at: 107 350 107
Size: 243 3251
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 120 354 1444 1625 1788 120
Size: 234 1090 181 163 1826
Fragments arranged by size:
1826 1090 234 181 163
BtsI GCAGTG_nn'
Cuts at: 737 737
Size: 3494
DraI TTT'AAA
Cuts at: 493 493
Size: 3494
DrdI GACnn_nn'nnGTC
Cuts at: 1200 2058 1200
Size: 858 2636
EaeI y'GGCC_r
Cuts at: 272 338 1079 1253 1644 1671 3016 272
Size: 66 741 174 391 27 1345 750
Fragments arranged by size:
1345 750 741 391 174 66 27
EagI C'GGCC_G
Cuts at: 1079 1079
Size: 3494
EarI CTCTTCn'nnn_
Cuts at: 1517 1727 1517
Size: 210 3284
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 376 1702 2012 2158 3304 376
Size: 1326 310 146 1146 566
Fragments arranged by size:
1326 1146 566 310 146
EcoICRI GAG'CTC
Cuts at: 506 506
Size: 3494
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1319 1751 2498 2766 1319
Size: 432 747 268 2047
Fragments arranged by size:
2047 747 432 268
EcoO109I rG'GnC_Cy
Cuts at: 633 633
Size: 3494
EcoRI G'AATT_C
Cuts at: 498 498
Size: 3494
FalI AAGnnnnnCTTnnnnnnnn_nnnnn'
Cuts at: 144 420 1513 144
Size: 276 1093 2125
Fragments arranged by size:
2125 1093 276
FspI TGC'GCA
Cuts at: 394 1275 394
Size: 881 2613
HaeII r_GCGC'y
Cuts at: 928 1176 2198 3177 928
Size: 248 1022 979 1245
Fragments arranged by size:
1245 1022 979 248
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1336 1366 1368 1398 1336
Size: 30 2 30 3432
Fragments arranged by size:
3432 30 30 2
HincII GTy'rAC
Cuts at: 330 533 330
Size: 203 3291
KasI G'GCGC_C
Cuts at: 924 1172 924
Size: 248 3246
KpnI G_GTAC'C
Cuts at: 514 514
Size: 3494
MluI A'CGCG_T
Cuts at: 2927 2927
Size: 3494
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 2165 2349 2165
Size: 184 3310
MscI TGG'CCA
Cuts at: 340 1255 340
Size: 915 2579
MslI CAynn'nnrTG
Cuts at: 223 1483 1610 223
Size: 1260 127 2107
Fragments arranged by size:
2107 1260 127
MspA1I CmG'CkG
Cuts at: 196 605 919 1279 2292 2537 196
Size: 409 314 360 1013 245 1153
Fragments arranged by size:
1153 1013 409 360 314 245
NaeI GCC'GGC
Cuts at: 1675 1675
Size: 3494
NarI GG'CG_CC
Cuts at: 925 1173 925
Size: 248 3246
NcoI C'CATG_G
Cuts at: 107 107
Size: 3494
NgoMIV G'CCGG_C
Cuts at: 1673 1673
Size: 3494
NspI r_CATG'y
Cuts at: 547 1047 1954 547
Size: 500 907 2087
Fragments arranged by size:
2087 907 500
PciI A'CATG_T
Cuts at: 1950 1950
Size: 3494
PmeI GTTT'AAAC
Cuts at: 493 493
Size: 3494
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 2633 2665 2633
Size: 32 3462
PstI C_TGCA'G
Cuts at: 541 1226 541
Size: 685 2809
PvuI CG_AT'CG
Cuts at: 104 104
Size: 3494
PvuII CAG'CTG
Cuts at: 196 919 1279 196
Size: 723 360 2411
Fragments arranged by size:
2411 723 360
RsrII CG'GwC_CG
Cuts at: 1689 1689
Size: 3494
SacI G_AGCT'C
Cuts at: 508 508
Size: 3494
SalI G'TCGA_C
Cuts at: 531 531
Size: 3494
SapI GCTCTTCn'nnn_
Cuts at: 1517 1727 1517
Size: 210 3284
SbfI CC_TGCA'GG
Cuts at: 541 541
Size: 3494
ScaI AGT'ACT
Cuts at: 3011 3011
Size: 3494
SfcI C'TryA_G
Cuts at: 33 537 1222 2215 2406 33
Size: 504 685 993 191 1121
Fragments arranged by size:
1121 993 685 504 191
SfoI GGC'GCC
Cuts at: 926 1174 926
Size: 248 3246
SgfI GCG_AT'CGC
Cuts at: 104 104
Size: 3494
SmaI CCC'GGG
Cuts at: 516 516
Size: 3494
SmlI C'TyrA_G
Cuts at: 405 649 1564 2056 2318 405
Size: 244 915 492 262 1581
Fragments arranged by size:
1581 915 492 262 244
SpeI A'CTAG_T
Cuts at: 67 67
Size: 3494
SphI G_CATG'C
Cuts at: 547 1047 547
Size: 500 2994
StyI C'CwwG_G
Cuts at: 107 140 206 239 284 628 982 107
Size: 33 66 33 45 344 354 2619
Fragments arranged by size:
2619 354 344 66 45 33 33
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 145 1077 1210 1669 1878 145
Size: 932 133 459 209 1761
Fragments arranged by size:
1761 932 459 209 133
TatI w'GTAC_w
Cuts at: 252 3009 252
Size: 2757 737
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 3011 3043 3011
Size: 32 3462
Tth111I GACn'n_nGTC
Cuts at: 1291 1291
Size: 3494
XbaI T'CTAG_A
Cuts at: 525 525
Size: 3494
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 147 348 989 147
Size: 201 641 2652
Fragments arranged by size:
2652 641 201
XmaI C'CCGG_G
Cuts at: 514 514
Size: 3494
XmnI GAAnn'nnTTC
Cuts at: 127 127
Size: 3494
Enzymes that do cut:
AccI Acc65I AclI AcuI AflIII AgeI AlwNI ApaLI
ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI
BbsI BciVI BclI BglII BlpI Bme1580I BmrI BplI
BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BseRI BseYI
BsiEI BsiHKAI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI
BsrDI BsrFI BsrGI BssSI BstAPI BstBI BstEII BstXI
BstYI BtgI BtgZI BtsI DraI DrdI EaeI EagI
EarI EciI EcoICRI Eco57MI EcoO109I EcoRI FalI FspI
HaeII Hin4I HincII KasI KpnI MluI MmeI MscI
MslI MspA1I NaeI NarI NcoI NgoMIV NspI PciI
PmeI PpiI PstI PvuI PvuII RsrII SacI SalI
SapI SbfI ScaI SfcI SfoI SgfI SmaI SmlI
SpeI SphI StyI TaqII TatI TstI Tth111I XbaI
XcmI XmaI XmnI
Enzymes that do not cut:
AarI AatII AfeI AflII AhdI AleI AlfI AloI
ApaI AscI AvrII BaeI BbvCI BcgI BfrBI BglI
BmgBI BmtI BpmI Bpu10I BsaXI BsgI BsiWI BsmI
BssHII BstZ17I Bsu36I ClaI CspCI DraIII EcoNI EcoRV
FseI FspAI HindIII HpaI MfeI NdeI NheI NotI
NruI NsiI PacI PasI PflMI PfoI PmlI PpuMI
PshAI PsiI PspOMI PspXI PsrI SacII SanDI SexAI
SfiI SgrAI SnaBI SrfI SspI StuI SwaI XhoI
ZraI