FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6789, 125 aa
  1>>>pF1KB6789 125 - 125 aa - 125 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4377+/-0.00033; mu= 11.3071+/- 0.021
 mean_var=72.8449+/-14.600, 0's: 0 Z-trim(115.0): 1  B-trim: 0 in 0/51
 Lambda= 0.150271
 statistics sampled from 25225 (25226) to 25225 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.296), width:  16
 Scan time:  4.710

The best scores are:                                      opt bits E(85289)
NP_001478 (OMIM: 601444) biogenesis of lysosome-re ( 153)  798 181.4 3.9e-46


>>NP_001478 (OMIM: 601444) biogenesis of lysosome-relate  (153 aa)
 initn: 798 init1: 798 opt: 798  Z-score: 949.2  bits: 181.4 E(85289): 3.9e-46
Smith-Waterman score: 798; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:29-153)

                                           10        20        30  
pF1KB6                             MLSRLLKEHQAKQNERKELQEKRRREAITAAT
                                   ::::::::::::::::::::::::::::::::
NP_001 MAPGSRGERSSFRSRRGPGVPSPQPDVTMLSRLLKEHQAKQNERKELQEKRRREAITAAT
               10        20        30        40        50        60

             40        50        60        70        80        90  
pF1KB6 CLTEALVDHLNVGVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGMVENFNQALKEIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CLTEALVDHLNVGVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGMVENFNQALKEIG
               70        80        90       100       110       120

            100       110       120     
pF1KB6 DVENWARSIELDMRTIATALEYVYKGQLQSAPS
       :::::::::::::::::::::::::::::::::
NP_001 DVENWARSIELDMRTIATALEYVYKGQLQSAPS
              130       140       150   




125 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:01:50 2016 done: Sat Nov  5 14:01:51 2016
 Total Scan time:  4.710 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]