FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6789, 125 aa
  1>>>pF1KB6789 125 - 125 aa - 125 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6146+/-0.000777; mu= 10.0960+/- 0.047
 mean_var=71.0895+/-14.105, 0's: 0 Z-trim(107.7): 5  B-trim: 0 in 0/51
 Lambda= 0.152115
 statistics sampled from 9760 (9761) to 9760 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.3), width:  16
 Scan time:  1.510

The best scores are:                                      opt bits E(32554)
CCDS8889.2 BLOC1S1 gene_id:2647|Hs108|chr12        ( 153)  798 183.5 3.6e-47


>>CCDS8889.2 BLOC1S1 gene_id:2647|Hs108|chr12             (153 aa)
 initn: 798 init1: 798 opt: 798  Z-score: 960.4  bits: 183.5 E(32554): 3.6e-47
Smith-Waterman score: 798; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:29-153)

                                           10        20        30  
pF1KB6                             MLSRLLKEHQAKQNERKELQEKRRREAITAAT
                                   ::::::::::::::::::::::::::::::::
CCDS88 MAPGSRGERSSFRSRRGPGVPSPQPDVTMLSRLLKEHQAKQNERKELQEKRRREAITAAT
               10        20        30        40        50        60

             40        50        60        70        80        90  
pF1KB6 CLTEALVDHLNVGVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGMVENFNQALKEIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 CLTEALVDHLNVGVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGMVENFNQALKEIG
               70        80        90       100       110       120

            100       110       120     
pF1KB6 DVENWARSIELDMRTIATALEYVYKGQLQSAPS
       :::::::::::::::::::::::::::::::::
CCDS88 DVENWARSIELDMRTIATALEYVYKGQLQSAPS
              130       140       150   




125 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:01:49 2016 done: Sat Nov  5 14:01:50 2016
 Total Scan time:  1.510 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]