FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6788, 154 aa
  1>>>pF1KB6788 154 - 154 aa - 154 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5045+/-0.000334; mu= 7.2900+/- 0.021
 mean_var=100.8148+/-19.827, 0's: 0 Z-trim(117.1): 5  B-trim: 0 in 0/54
 Lambda= 0.127736
 statistics sampled from 28793 (28798) to 28793 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.338), width:  16
 Scan time:  4.120

The best scores are:                                      opt bits E(85289)
NP_036526 (OMIM: 613466) prefoldin subunit 2 [Homo ( 154)  954 185.4 3.2e-47
XP_011507926 (OMIM: 613466) PREDICTED: prefoldin s ( 106)  659 130.9 5.5e-31


>>NP_036526 (OMIM: 613466) prefoldin subunit 2 [Homo sap  (154 aa)
 initn: 954 init1: 954 opt: 954  Z-score: 968.7  bits: 185.4 E(85289): 3.2e-47
Smith-Waterman score: 954; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:1-154)

               10        20        30        40        50        60
pF1KB6 MAENSGRAGKSSGSGAGKGAVSAEQVIAGFNRLRQEQRGLASKAAELEMELNEHSLVIDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MAENSGRAGKSSGSGAGKGAVSAEQVIAGFNRLRQEQRGLASKAAELEMELNEHSLVIDT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LKEVDETRKCYRMVGGVLVERTVKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 LKEVDETRKCYRMVGGVLVERTVKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFRE
               70        80        90       100       110       120

              130       140       150    
pF1KB6 KHNIRLMGEDEKPAAKENSEGAGAKASSAGVLVS
       ::::::::::::::::::::::::::::::::::
NP_036 KHNIRLMGEDEKPAAKENSEGAGAKASSAGVLVS
              130       140       150    

>>XP_011507926 (OMIM: 613466) PREDICTED: prefoldin subun  (106 aa)
 initn: 659 init1: 659 opt: 659  Z-score: 677.3  bits: 130.9 E(85289): 5.5e-31
Smith-Waterman score: 659; 100.0% identity (100.0% similar) in 106 aa overlap (49-154:1-106)

       20        30        40        50        60        70        
pF1KB6 GAVSAEQVIAGFNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVL
                                     ::::::::::::::::::::::::::::::
XP_011                               MELNEHSLVIDTLKEVDETRKCYRMVGGVL
                                             10        20        30

       80        90       100       110       120       130        
pF1KB6 VERTVKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRLMGEDEKPAAKEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VERTVKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRLMGEDEKPAAKEN
               40        50        60        70        80        90

      140       150    
pF1KB6 SEGAGAKASSAGVLVS
       ::::::::::::::::
XP_011 SEGAGAKASSAGVLVS
              100      




154 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:01:01 2016 done: Sat Nov  5 00:01:01 2016
 Total Scan time:  4.120 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]