FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6787, 125 aa
  1>>>pF1KB6787 125 - 125 aa - 125 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2029+/-0.000691; mu= 12.0412+/- 0.042
 mean_var=72.5602+/-13.756, 0's: 0 Z-trim(110.3): 4  B-trim: 138 in 1/49
 Lambda= 0.150565
 statistics sampled from 11490 (11491) to 11490 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.353), width:  16
 Scan time:  1.720

The best scores are:                                      opt bits E(32554)
CCDS8406.1 RPS25 gene_id:6230|Hs108|chr11          ( 125)  806 183.3 3.4e-47


>>CCDS8406.1 RPS25 gene_id:6230|Hs108|chr11               (125 aa)
 initn: 806 init1: 806 opt: 806  Z-score: 960.7  bits: 183.3 E(32554): 3.4e-47
Smith-Waterman score: 806; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125)

               10        20        30        40        50        60
pF1KB6 MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDAPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDAPA
               70        80        90       100       110       120

            
pF1KB6 AGEDA
       :::::
CCDS84 AGEDA
            




125 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:14:34 2016 done: Fri Nov  4 15:14:34 2016
 Total Scan time:  1.720 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]