Result of FASTA (omim) for
pF1KB6774
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6774, 151 aa
1>>>pF1KB6774 151 - 151 aa - 151 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9607+/-0.000298; mu= 13.6859+/- 0.019
mean_var=63.7652+/-12.600, 0's: 0 Z-trim(117.0): 14 B-trim: 0 in 0/57
Lambda= 0.160614
statistics sampled from 28689 (28703) to 28689 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.337), width: 16
Scan time: 5.150
The best scores are: opt bits E(85289)
NP_067080 (OMIM: 605304) neuroglobin [Homo sapiens ( 151) 1005 240.8 6.2e-64
NP_005321 (OMIM: 142100) hemoglobin subunit epsilo ( 147) 159 44.8 6.3e-05
NP_599030 (OMIM: 608759) cytoglobin [Homo sapiens] ( 190) 147 42.1 0.00053
XP_005257062 (OMIM: 608759) PREDICTED: cytoglobin ( 202) 147 42.1 0.00056
NP_000550 (OMIM: 141749,142200) hemoglobin subunit ( 147) 139 40.1 0.0016
NP_000175 (OMIM: 141749,142250,613977) hemoglobin ( 147) 138 39.9 0.0018
NP_000510 (OMIM: 142000) hemoglobin subunit delta ( 147) 130 38.1 0.0066
NP_000509 (OMIM: 140700,141749,141900,603902,60390 ( 147) 129 37.8 0.0078
>>NP_067080 (OMIM: 605304) neuroglobin [Homo sapiens] (151 aa)
initn: 1005 init1: 1005 opt: 1005 Z-score: 1268.7 bits: 240.8 E(85289): 6.2e-64
Smith-Waterman score: 1005; 100.0% identity (100.0% similar) in 151 aa overlap (1-151:1-151)
10 20 30 40 50 60
pF1KB6 MERPEPELIRQSWRAVSRSPLEHGTVLFARLFALEPDLLPLFQYNCRQFSSPEDCLSSPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 MERPEPELIRQSWRAVSRSPLEHGTVLFARLFALEPDLLPLFQYNCRQFSSPEDCLSSPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 FLDHIRKVMLVIDAAVTNVEDLSSLEEYLASLGRKHRAVGVKLSSFSTVGESLLYMLEKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 FLDHIRKVMLVIDAAVTNVEDLSSLEEYLASLGRKHRAVGVKLSSFSTVGESLLYMLEKC
70 80 90 100 110 120
130 140 150
pF1KB6 LGPAFTPATRAAWSQLYGAVVQAMSRGWDGE
:::::::::::::::::::::::::::::::
NP_067 LGPAFTPATRAAWSQLYGAVVQAMSRGWDGE
130 140 150
>>NP_005321 (OMIM: 142100) hemoglobin subunit epsilon [H (147 aa)
initn: 122 init1: 70 opt: 159 Z-score: 209.5 bits: 44.8 E(85289): 6.3e-05
Smith-Waterman score: 159; 28.0% identity (61.6% similar) in 125 aa overlap (22-145:23-143)
10 20 30 40 50
pF1KB6 MERPEPELIRQSWRAVSRSPLEHGTVLFARLFALEPDLLPLFQYNCRQFSSPEDCLSSP
: : ..::... : .:. . ..::: :..:
NP_005 MVHFTAEEKAAVTSLWSKMNVEEAGGEALGRLLVVYPWTQRFFD-SFGNLSSPSAILGNP
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 EFLDHIRKVMLVIDAAVTNVEDLSSLEEYLASLGRKH-RAVGVKLSSFSTVGESLLYMLE
. : .::. . :. :...: . .:.:.. : . : .:. .:. .. .:
NP_005 KVKAHGKKVLTSFGDAIKNMDNL---KPAFAKLSELHCDKLHVDPENFKLLGNVMVIILA
60 70 80 90 100 110
120 130 140 150
pF1KB6 KCLGPAFTPATRAAWSQLYGAVVQAMSRGWDGE
.: ::: ..:::..: .::. :..
NP_005 THFGKEFTPEVQAAWQKLVSAVAIALAHKYH
120 130 140
>>NP_599030 (OMIM: 608759) cytoglobin [Homo sapiens] (190 aa)
initn: 76 init1: 76 opt: 147 Z-score: 192.8 bits: 42.1 E(85289): 0.00053
Smith-Waterman score: 147; 22.6% identity (57.4% similar) in 155 aa overlap (1-148:19-171)
10 20 30 40
pF1KB6 MERPEPELIRQSWRAVSRSPLEHGTVLFARLFALEPDLLPLF
. . : . .. : . . . :.....:.:. :. :
NP_599 MEKVPGEMEIERRERSEELSEAERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYF
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB6 QYNCRQFSSPEDCLSSPEFLDHIRKVMLVIDAAVTNVEDLSSLEEYLASLGRKHRAVGVK
. . ... .: . ::.. : .:: .....: :..: ... :: .:. : :. :
NP_599 S-QFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGKAH-ALKHK
70 80 90 100 110
110 120 130 140 150
pF1KB6 LSS--FSTVGESLLYMLEKCLGPAFTPATRAAWSQLYGAV---VQAMSR--GWDGE
. :. .. .: .. . .. : : :. ::..: : . : : . ::
NP_599 VEPVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGWVQQVPNA
120 130 140 150 160 170
NP_599 TTPPATLPSSGP
180 190
>>XP_005257062 (OMIM: 608759) PREDICTED: cytoglobin isof (202 aa)
initn: 76 init1: 76 opt: 147 Z-score: 192.5 bits: 42.1 E(85289): 0.00056
Smith-Waterman score: 147; 22.6% identity (57.4% similar) in 155 aa overlap (1-148:19-171)
10 20 30 40
pF1KB6 MERPEPELIRQSWRAVSRSPLEHGTVLFARLFALEPDLLPLF
. . : . .. : . . . :.....:.:. :. :
XP_005 MEKVPGEMEIERRERSEELSEAERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYF
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB6 QYNCRQFSSPEDCLSSPEFLDHIRKVMLVIDAAVTNVEDLSSLEEYLASLGRKHRAVGVK
. . ... .: . ::.. : .:: .....: :..: ... :: .:. : :. :
XP_005 S-QFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGKAH-ALKHK
70 80 90 100 110
110 120 130 140 150
pF1KB6 LSS--FSTVGESLLYMLEKCLGPAFTPATRAAWSQLYGAV---VQAMSR--GWDGE
. :. .. .: .. . .. : : :. ::..: : . : : . ::
XP_005 VEPVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGWVQQVPNA
120 130 140 150 160 170
XP_005 TTHSSWRRSPEGSWGRQASCPSCC
180 190 200
>>NP_000550 (OMIM: 141749,142200) hemoglobin subunit gam (147 aa)
initn: 109 init1: 69 opt: 139 Z-score: 184.4 bits: 40.1 E(85289): 0.0016
Smith-Waterman score: 139; 26.0% identity (61.8% similar) in 123 aa overlap (24-145:25-143)
10 20 30 40 50
pF1KB6 MERPEPELIRQSWRAVSRSPLEHGTVLFARLFALEPDLLPLFQYNCRQFSSPEDCLSSP
: ..::... : .:. . ..:: ...:
NP_000 MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFD-SFGNLSSASAIMGNP
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 EFLDHIRKVMLVIDAAVTNVEDLSSLEEYLASLGRKH-RAVGVKLSSFSTVGESLLYMLE
. : .::. . :. ...::.. .:.:.. : . : .:. .:. :. .:
NP_000 KVKAHGKKVLTSLGDATKHLDDLKGT---FAQLSELHCDKLHVDPENFKLLGNVLVTVLA
60 70 80 90 100 110
120 130 140 150
pF1KB6 KCLGPAFTPATRAAWSQLYGAVVQAMSRGWDGE
.: ::: ..:.:... ::..:.:
NP_000 IHFGKEFTPEVQASWQKMVTAVASALSSRYH
120 130 140
>>NP_000175 (OMIM: 141749,142250,613977) hemoglobin subu (147 aa)
initn: 108 init1: 64 opt: 138 Z-score: 183.2 bits: 39.9 E(85289): 0.0018
Smith-Waterman score: 138; 25.2% identity (61.8% similar) in 123 aa overlap (24-145:25-143)
10 20 30 40 50
pF1KB6 MERPEPELIRQSWRAVSRSPLEHGTVLFARLFALEPDLLPLFQYNCRQFSSPEDCLSSP
: ..::... : .:. . ..:: ...:
NP_000 MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFD-SFGNLSSASAIMGNP
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 EFLDHIRKVMLVIDAAVTNVEDLSSLEEYLASLGRKH-RAVGVKLSSFSTVGESLLYMLE
. : .::. . :. ...::.. .:.:.. : . : .:. .:. :. .:
NP_000 KVKAHGKKVLTSLGDAIKHLDDLKGT---FAQLSELHCDKLHVDPENFKLLGNVLVTVLA
60 70 80 90 100 110
120 130 140 150
pF1KB6 KCLGPAFTPATRAAWSQLYGAVVQAMSRGWDGE
.: ::: ..:.:... .:..:.:
NP_000 IHFGKEFTPEVQASWQKMVTGVASALSSRYH
120 130 140
>>NP_000510 (OMIM: 142000) hemoglobin subunit delta [Hom (147 aa)
initn: 100 init1: 51 opt: 130 Z-score: 173.1 bits: 38.1 E(85289): 0.0066
Smith-Waterman score: 130; 22.4% identity (60.8% similar) in 143 aa overlap (4-145:6-143)
10 20 30 40 50
pF1KB6 MERPEPEL-IRQSWRAVSRSPLEHGTVLFARLFALEPDLLPLFQYNCRQFSSPEDCLS
:: . . : :. . . : ..::... : .:. . ..:::. ..
NP_000 MVHLTPEEKTAVNALWGKVNVDAV--GGEALGRLLVVYPWTQRFFE-SFGDLSSPDAVMG
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 SPEFLDHIRKVMLVIDAAVTNVEDLSSLEEYLASLGRKHRAVGVKLSSFSTVGESLLYML
.:. : .::. ... .......:.. :. : . . : .: .:. :. .:
NP_000 NPKVKAHGKKVLGAFSDGLAHLDNLKGTFSQLSEL--HCDKLHVDPENFRLLGNVLVCVL
60 70 80 90 100 110
120 130 140 150
pF1KB6 EKCLGPAFTPATRAAWSQLYGAVVQAMSRGWDGE
. .: ::: .::.... ..:..:..
NP_000 ARNFGKEFTPQMQAAYQKVVAGVANALAHKYH
120 130 140
>>NP_000509 (OMIM: 140700,141749,141900,603902,603903,60 (147 aa)
initn: 51 init1: 51 opt: 129 Z-score: 171.9 bits: 37.8 E(85289): 0.0078
Smith-Waterman score: 129; 22.5% identity (62.7% similar) in 142 aa overlap (5-145:8-143)
10 20 30 40 50
pF1KB6 MERPEPELIRQSWRAVSRSPLEHGTVLFARLFALEPDLLPLFQYNCRQFSSPEDCLS
: . : :. . : : ..::... : .:. . ..:.:. ..
NP_000 MVHLTPEEKSAVTALWGKVNVD--EVGGEALGRLLVVYPWTQRFFE-SFGDLSTPDAVMG
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 SPEFLDHIRKVMLVIDAAVTNVEDLSSLEEYLASLGRKH-RAVGVKLSSFSTVGESLLYM
.:. : .::. ... .......:.. .:.:.. : . : .: .:. :. .
NP_000 NPKVKAHGKKVLGAFSDGLAHLDNLKGT---FATLSELHCDKLHVDPENFRLLGNVLVCV
60 70 80 90 100 110
120 130 140 150
pF1KB6 LEKCLGPAFTPATRAAWSQLYGAVVQAMSRGWDGE
: . .: ::: ..::.... ..:..:..
NP_000 LAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH
120 130 140
151 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:57:05 2016 done: Fri Nov 4 23:57:06 2016
Total Scan time: 5.150 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]