Result of FASTA (omim) for
pF1KB6770
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6770, 150 aa
1>>>pF1KB6770 150 - 150 aa - 150 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2879+/-0.000377; mu= 11.7006+/- 0.023
mean_var=60.6714+/-12.216, 0's: 0 Z-trim(112.6): 6 B-trim: 0 in 0/53
Lambda= 0.164658
statistics sampled from 21598 (21604) to 21598 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.647), E-opt: 0.2 (0.253), width: 16
Scan time: 4.690
The best scores are: opt bits E(85289)
NP_002592 (OMIM: 602676,615665) retinal rod rhodop ( 150) 993 244.1 6.4e-65
XP_011509644 (OMIM: 602676,615665) PREDICTED: reti ( 131) 865 213.7 8.1e-56
NP_001277947 (OMIM: 602676,615665) retinal rod rho ( 93) 585 147.1 6.3e-36
NP_001317095 (OMIM: 604011,615518) protein unc-119 ( 145) 134 40.0 0.0017
NP_005139 (OMIM: 604011,615518) protein unc-119 ho ( 240) 134 40.1 0.0026
NP_473376 (OMIM: 604011,615518) protein unc-119 ho ( 220) 127 38.4 0.0076
>>NP_002592 (OMIM: 602676,615665) retinal rod rhodopsin- (150 aa)
initn: 993 init1: 993 opt: 993 Z-score: 1286.5 bits: 244.1 E(85289): 6.4e-65
Smith-Waterman score: 993; 100.0% identity (100.0% similar) in 150 aa overlap (1-150:1-150)
10 20 30 40 50 60
pF1KB6 MSAKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MSAKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RELNFSSTEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RELNFSSTEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPA
70 80 90 100 110 120
130 140 150
pF1KB6 SVLTGNVIIETKFFDDDLLVSTSRVRLFYV
::::::::::::::::::::::::::::::
NP_002 SVLTGNVIIETKFFDDDLLVSTSRVRLFYV
130 140 150
>>XP_011509644 (OMIM: 602676,615665) PREDICTED: retinal (131 aa)
initn: 865 init1: 865 opt: 865 Z-score: 1123.1 bits: 213.7 E(85289): 8.1e-56
Smith-Waterman score: 865; 100.0% identity (100.0% similar) in 131 aa overlap (20-150:1-131)
10 20 30 40 50 60
pF1KB6 MSAKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVS
:::::::::::::::::::::::::::::::::::::::::
XP_011 MNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVS
10 20 30 40
70 80 90 100 110 120
pF1KB6 RELNFSSTEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RELNFSSTEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPA
50 60 70 80 90 100
130 140 150
pF1KB6 SVLTGNVIIETKFFDDDLLVSTSRVRLFYV
::::::::::::::::::::::::::::::
XP_011 SVLTGNVIIETKFFDDDLLVSTSRVRLFYV
110 120 130
>>NP_001277947 (OMIM: 602676,615665) retinal rod rhodops (93 aa)
initn: 585 init1: 585 opt: 585 Z-score: 766.0 bits: 147.1 E(85289): 6.3e-36
Smith-Waterman score: 585; 100.0% identity (100.0% similar) in 88 aa overlap (1-88:1-88)
10 20 30 40 50 60
pF1KB6 MSAKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSAKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RELNFSSTEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPA
::::::::::::::::::::::::::::
NP_001 RELNFSSTEQMEKFRLEQKVYFKGQCLEVGTLS
70 80 90
>>NP_001317095 (OMIM: 604011,615518) protein unc-119 hom (145 aa)
initn: 121 init1: 104 opt: 134 Z-score: 183.9 bits: 40.0 E(85289): 0.0017
Smith-Waterman score: 134; 26.3% identity (60.6% similar) in 99 aa overlap (54-149:43-141)
30 40 50 60 70 80
pF1KB6 DAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRELNFSSTEQ-MEKFRLEQKVYF
:. . :. ..:. .. ...::. .. ::
NP_001 PPVSERLPINRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYF
20 30 40 50 60 70
90 100 110 120 130 140
pF1KB6 KGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGNVIIETK--FFDDDLLV
..: :. . :.::: ::.: :: . . . : :. . . .. .. .: :: ::
NP_001 RNQLLKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLV
80 90 100 110 120 130
150
pF1KB6 STSRVRLFYV
... :
NP_001 MHNKADYSYSGTP
140
>>NP_005139 (OMIM: 604011,615518) protein unc-119 homolo (240 aa)
initn: 138 init1: 104 opt: 134 Z-score: 180.5 bits: 40.1 E(85289): 0.0026
Smith-Waterman score: 136; 22.9% identity (57.5% similar) in 153 aa overlap (15-149:84-236)
10 20 30
pF1KB6 MSAKDERAREILRGFKLNWM--NLRDAETGKILWQG-----TED
.:.... ..:: ..: .:.. .:
NP_005 LQRKQPIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSER
60 70 80 90 100 110
40 50 60 70 80
pF1KB6 LSV------PGVEHEARVP--KKILKCKAVSRELNFSSTEQ-MEKFRLEQKVYFKGQCLE
: . :.. . .: .:. . :. ..:. .. ...::. .. ::..: :.
NP_005 LPINRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLK
120 130 140 150 160 170
90 100 110 120 130 140
pF1KB6 EWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGNVIIETK--FFDDDLLVSTSRVR
. :.::: ::.: :: . . . : :. . . .. .. .: :: :: ...
NP_005 SFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKAD
180 190 200 210 220 230
150
pF1KB6 LFYV
:
NP_005 YSYSGTP
240
>>NP_473376 (OMIM: 604011,615518) protein unc-119 homolo (220 aa)
initn: 121 init1: 104 opt: 127 Z-score: 172.1 bits: 38.4 E(85289): 0.0076
Smith-Waterman score: 129; 24.6% identity (60.7% similar) in 122 aa overlap (15-120:84-205)
10 20 30
pF1KB6 MSAKDERAREILRGFKLNWM--NLRDAETGKILWQG-----TED
.:.... ..:: ..: .:.. .:
NP_473 LQRKQPIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSER
60 70 80 90 100 110
40 50 60 70 80
pF1KB6 LSV------PGVEHEARVP--KKILKCKAVSRELNFSSTEQ-MEKFRLEQKVYFKGQCLE
: . :.. . .: .:. . :. ..:. .. ...::. .. ::..: :.
NP_473 LPINRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLK
120 130 140 150 160 170
90 100 110 120 130 140
pF1KB6 EWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGNVIIETKFFDDDLLVSTSRVRLF
. :.::: ::.: :: . . . : :. . :
NP_473 SFDFHFGFCIPSSKNTCEHIYDFPPLSEELSARAGSSGSGEVGASRD
180 190 200 210 220
150
pF1KB6 YV
150 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:55:55 2016 done: Fri Nov 4 23:55:55 2016
Total Scan time: 4.690 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]