FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6770, 150 aa
  1>>>pF1KB6770 150 - 150 aa - 150 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3059+/-0.000846; mu= 11.5185+/- 0.051
 mean_var=59.0813+/-11.701, 0's: 0 Z-trim(105.9): 11  B-trim: 0 in 0/50
 Lambda= 0.166859
 statistics sampled from 8699 (8705) to 8699 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.267), width:  16
 Scan time:  1.710

The best scores are:                                      opt bits E(32554)
CCDS33398.1 PDE6D gene_id:5147|Hs108|chr2          ( 150)  993 247.1 3.1e-66
CCDS77538.1 PDE6D gene_id:5147|Hs108|chr2          (  93)  585 148.8 7.5e-37


>>CCDS33398.1 PDE6D gene_id:5147|Hs108|chr2               (150 aa)
 initn: 993 init1: 993 opt: 993  Z-score: 1302.6  bits: 247.1 E(32554): 3.1e-66
Smith-Waterman score: 993; 100.0% identity (100.0% similar) in 150 aa overlap (1-150:1-150)

               10        20        30        40        50        60
pF1KB6 MSAKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MSAKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RELNFSSTEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RELNFSSTEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPA
               70        80        90       100       110       120

              130       140       150
pF1KB6 SVLTGNVIIETKFFDDDLLVSTSRVRLFYV
       ::::::::::::::::::::::::::::::
CCDS33 SVLTGNVIIETKFFDDDLLVSTSRVRLFYV
              130       140       150

>>CCDS77538.1 PDE6D gene_id:5147|Hs108|chr2               (93 aa)
 initn: 585 init1: 585 opt: 585  Z-score: 775.1  bits: 148.8 E(32554): 7.5e-37
Smith-Waterman score: 585; 100.0% identity (100.0% similar) in 88 aa overlap (1-88:1-88)

               10        20        30        40        50        60
pF1KB6 MSAKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MSAKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RELNFSSTEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPA
       ::::::::::::::::::::::::::::                                
CCDS77 RELNFSSTEQMEKFRLEQKVYFKGQCLEVGTLS                           
               70        80        90                              




150 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:55:54 2016 done: Fri Nov  4 23:55:55 2016
 Total Scan time:  1.710 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]