FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6752, 145 aa
  1>>>pF1KB6752 145 - 145 aa - 145 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1548+/-0.000285; mu= 13.4512+/- 0.018
 mean_var=69.6508+/-13.862, 0's: 0 Z-trim(118.3): 3  B-trim: 204 in 1/53
 Lambda= 0.153678
 statistics sampled from 31196 (31199) to 31196 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.366), width:  16
 Scan time:  4.750

The best scores are:                                      opt bits E(85289)
NP_001009 (OMIM: 180535) 40S ribosomal protein S15 ( 145)  957 220.2 9.6e-58
NP_001295155 (OMIM: 180535) 40S ribosomal protein  ( 152)  953 219.3 1.8e-57


>>NP_001009 (OMIM: 180535) 40S ribosomal protein S15 iso  (145 aa)
 initn: 957 init1: 957 opt: 957  Z-score: 1157.7  bits: 220.2 E(85289): 9.6e-58
Smith-Waterman score: 957; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)

               10        20        30        40        50        60
pF1KB6 MAEVEQKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAEVEQKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFS
               70        80        90       100       110       120

              130       140     
pF1KB6 ITYKPVKHGRPGIGATHSSRFIPLK
       :::::::::::::::::::::::::
NP_001 ITYKPVKHGRPGIGATHSSRFIPLK
              130       140     

>>NP_001295155 (OMIM: 180535) 40S ribosomal protein S15   (152 aa)
 initn: 953 init1: 953 opt: 953  Z-score: 1152.6  bits: 219.3 E(85289): 1.8e-57
Smith-Waterman score: 953; 99.3% identity (100.0% similar) in 145 aa overlap (1-145:8-152)

                      10        20        30        40        50   
pF1KB6        MAEVEQKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQ
              .::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLGRGADLAEVEQKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQ
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KB6 HSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIG
               70        80        90       100       110       120

           120       130       140     
pF1KB6 HYLGEFSITYKPVKHGRPGIGATHSSRFIPLK
       ::::::::::::::::::::::::::::::::
NP_001 HYLGEFSITYKPVKHGRPGIGATHSSRFIPLK
              130       140       150  




145 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:57:06 2016 done: Sat Nov  5 13:57:07 2016
 Total Scan time:  4.750 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]