Result of FASTA (ccds) for
pF1KB6720
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6720, 134 aa
1>>>pF1KB6720 134 - 134 aa - 134 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7838+/-0.000795; mu= 13.5766+/- 0.048
mean_var=55.5087+/-11.297, 0's: 0 Z-trim(106.0): 27 B-trim: 3 in 1/47
Lambda= 0.172145
statistics sampled from 8691 (8712) to 8691 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.648), E-opt: 0.2 (0.268), width: 16
Scan time: 1.530
The best scores are: opt bits E(32554)
CCDS3109.1 RBP2 gene_id:5948|Hs108|chr3 ( 134) 911 233.9 2.2e-62
CCDS109.1 RBP7 gene_id:116362|Hs108|chr1 ( 134) 556 145.8 7.7e-36
CCDS3110.2 RBP1 gene_id:5947|Hs108|chr3 ( 197) 495 130.7 3.9e-31
CCDS8574.1 RBP5 gene_id:83758|Hs108|chr12 ( 135) 460 121.9 1.2e-28
CCDS342.1 FABP3 gene_id:2170|Hs108|chr1 ( 133) 330 89.6 6.1e-19
CCDS5127.1 FABP7 gene_id:2173|Hs108|chr6 ( 132) 301 82.4 8.9e-17
CCDS6230.1 FABP4 gene_id:2167|Hs108|chr8 ( 132) 295 80.9 2.5e-16
CCDS1152.1 CRABP2 gene_id:1382|Hs108|chr1 ( 138) 286 78.7 1.2e-15
CCDS10301.1 CRABP1 gene_id:1381|Hs108|chr15 ( 137) 282 77.7 2.4e-15
CCDS83121.1 FABP7 gene_id:2173|Hs108|chr6 ( 166) 272 75.3 1.6e-14
CCDS6229.1 PMP2 gene_id:5375|Hs108|chr8 ( 132) 268 74.2 2.6e-14
CCDS46926.1 RBP1 gene_id:5947|Hs108|chr3 ( 157) 262 72.8 8.4e-14
CCDS46925.1 RBP1 gene_id:5947|Hs108|chr3 ( 153) 259 72.0 1.4e-13
CCDS47882.1 FABP12 gene_id:646486|Hs108|chr8 ( 140) 233 65.6 1.1e-11
>>CCDS3109.1 RBP2 gene_id:5948|Hs108|chr3 (134 aa)
initn: 911 init1: 911 opt: 911 Z-score: 1233.4 bits: 233.9 E(32554): 2.2e-62
Smith-Waterman score: 911; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)
10 20 30 40 50 60
pF1KB6 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGEKENRGWKQWIEGDKLYLEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 YDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGEKENRGWKQWIEGDKLYLEL
70 80 90 100 110 120
130
pF1KB6 TCGDQVCRQVFKKK
::::::::::::::
CCDS31 TCGDQVCRQVFKKK
130
>>CCDS109.1 RBP7 gene_id:116362|Hs108|chr1 (134 aa)
initn: 558 init1: 545 opt: 556 Z-score: 756.9 bits: 145.8 E(32554): 7.7e-36
Smith-Waterman score: 556; 59.4% identity (80.5% similar) in 133 aa overlap (1-133:1-133)
10 20 30 40 50 60
pF1KB6 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRN
: : .::: . :..:::::: :: ::::::::: : :::.:.::.: .:.:..::
CCDS10 MPADLSGTWTLLSSDNFEGYMLALGIDFATRKIAKLLKPQKVIEQNGDSFTIHTNSSLRN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGEKENRGWKQWIEGDKLYLEL
: : : :: :::: ...::::. :.:: :..: :.:.:::::.:::: .:::::::.::.
CCDS10 YFVKFKVGEEFDEDNRGLDNRKCKSLVIWDNDRLTCIQKGEKKNRGWTHWIEGDKLHLEM
70 80 90 100 110 120
130
pF1KB6 TCGDQVCRQVFKKK
: :::.:.:..
CCDS10 FCEGQVCKQTFQRA
130
>>CCDS3110.2 RBP1 gene_id:5947|Hs108|chr3 (197 aa)
initn: 464 init1: 464 opt: 495 Z-score: 672.5 bits: 130.7 E(32554): 3.9e-31
Smith-Waterman score: 495; 55.6% identity (72.9% similar) in 133 aa overlap (1-133:63-195)
10 20 30
pF1KB6 MTRDQNGTWEMESNENFEGYMKALDIDFAT
: : .: :.: ::::: :..:::.. :
CCDS31 HHPRSTGSRCPGSLQPSRPLVANWLQSLPEMPVDFTGYWKMLVNENFEEYLRALDVNVAL
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB6 RKIAVRLTQTKVIDQDGDNFKTKTTSTFRNYDVDFTVGVEFDEYTKSLDNRHVKALVTWE
:::: : : : ::::.. .: :::::: .:: :: ::.: ..:.:. . :.:.
CCDS31 RKIANLLKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTVSWD
100 110 120 130 140 150
100 110 120 130
pF1KB6 GDVLVCVQKGEKENRGWKQWIEGDKLYLELTCGDQVCRQVFKKK
:: : ::::::::.::: ::::::.:.::. ::.:::::
CCDS31 GDKLQCVQKGEKEGRGWTQWIEGDELHLEMRVEGVVCKQVFKKVQ
160 170 180 190
>>CCDS8574.1 RBP5 gene_id:83758|Hs108|chr12 (135 aa)
initn: 437 init1: 421 opt: 460 Z-score: 628.0 bits: 121.9 E(32554): 1.2e-28
Smith-Waterman score: 460; 51.1% identity (80.5% similar) in 133 aa overlap (1-133:1-133)
10 20 30 40 50 60
pF1KB6 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRN
: . .: ... :..:.: :..::.:..:.::::. : : :...:... ..: :::::
CCDS85 MPPNLTGYYRFVSQKNMEDYLQALNISLAVRKIALLLKPDKEIEHQGNHMTVRTLSTFRN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGEKENRGWKQWIEGDKLYLEL
: :.: :::::.: .:.:.:. ...:::: . :::::::: ::::..:.::. :::::
CCDS85 YTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVCVQKGEVPNRGWRHWLEGEMLYLEL
70 80 90 100 110 120
130
pF1KB6 TCGDQVCRQVFKKK
: : ::.:::.:
CCDS85 TARDAVCEQVFRKVR
130
>>CCDS342.1 FABP3 gene_id:2170|Hs108|chr1 (133 aa)
initn: 306 init1: 229 opt: 330 Z-score: 453.6 bits: 89.6 E(32554): 6.1e-19
Smith-Waterman score: 330; 42.6% identity (71.3% similar) in 129 aa overlap (7-134:7-132)
10 20 30 40 50 60
pF1KB6 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRN
:::.. ...::. :::.: . ::::..: : .:...:: . :: :::.:
CCDS34 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 YDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGE-KENRGWKQWIEGDKLYLE
...: .:::::: : :.:.::..:: .: :: .:: . .:. .. :.: :: :
CCDS34 TEISFKLGVEFDETTA--DDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDG-KLILT
70 80 90 100 110
120 130
pF1KB6 LTCGDQVCRQVFKKK
:: : :: ....:.
CCDS34 LTHGTAVCTRTYEKEA
120 130
>>CCDS5127.1 FABP7 gene_id:2173|Hs108|chr6 (132 aa)
initn: 310 init1: 210 opt: 301 Z-score: 414.7 bits: 82.4 E(32554): 8.9e-17
Smith-Waterman score: 301; 38.1% identity (69.0% similar) in 126 aa overlap (8-133:8-131)
10 20 30 40 50 60
pF1KB6 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRN
::.. ...::. ::::: . ::::... : .:.:.::. .: :::.:
CCDS51 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGEKENRGWKQWIEGDKLYLEL
...: .: :::: : :.:. :..:. .:: :: .:: . .. .. . :. :. . :
CCDS51 TEISFQLGEEFDETTA--DDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTL
70 80 90 100 110
130
pF1KB6 TCGDQVCRQVFKKK
: :: : . ..:
CCDS51 TFGDVVAVRHYEKA
120 130
>>CCDS6230.1 FABP4 gene_id:2167|Hs108|chr8 (132 aa)
initn: 294 init1: 211 opt: 295 Z-score: 406.7 bits: 80.9 E(32554): 2.5e-16
Smith-Waterman score: 295; 39.4% identity (66.1% similar) in 127 aa overlap (7-133:7-131)
10 20 30 40 50 60
pF1KB6 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRN
:::.. :.:::. ::: . . :::::.: . .:. .:: . :. :::.:
CCDS62 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGEKENRGWKQWIEGDKLYLEL
...: .: :::: : :.:.::. .: .: ::: ::: . .. :. : ::: .:
CCDS62 TEISFILGQEFDEVTA--DDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVEC
70 80 90 100 110
130
pF1KB6 TCGDQVCRQVFKKK
. . .:...
CCDS62 VMKGVTSTRVYERA
120 130
>>CCDS1152.1 CRABP2 gene_id:1382|Hs108|chr1 (138 aa)
initn: 198 init1: 97 opt: 286 Z-score: 394.3 bits: 78.7 E(32554): 1.2e-15
Smith-Waterman score: 286; 36.8% identity (66.2% similar) in 136 aa overlap (6-134:5-138)
10 20 30 40 50
pF1KB6 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVID--QDGDNFKTKTTSTF
.:.:.. .:::: .:.: .. ::::: .. ... :.::.: ::..:
CCDS11 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTV
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 RNYDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDV-LVCVQK---GEKENRGWKQWIEGD
:. ...: :: ::.: : .:.: :.:: ::.. .:: :: :: . .: . . .:
CCDS11 RTTEINFKVGEEFEEQT--VDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTND
60 70 80 90 100 110
120 130
pF1KB6 -KLYLELTCGDQVCRQVFKKK
.: : .: : :: .:. ..
CCDS11 GELILTMTADDVVCTRVYVRE
120 130
>>CCDS10301.1 CRABP1 gene_id:1381|Hs108|chr15 (137 aa)
initn: 139 init1: 139 opt: 282 Z-score: 389.0 bits: 77.7 E(32554): 2.4e-15
Smith-Waterman score: 282; 35.8% identity (67.2% similar) in 134 aa overlap (7-134:6-137)
10 20 30 40 50
pF1KB6 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRL-TQTKV-IDQDGDNFKTKTTSTF
:::.:.:.:::. .::: .. ::.:: .. .: : ::::.: ::..:
CCDS10 MPNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTV
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 RNYDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLV-CVQ---KGEKENRGWKQWIEGD
:. ...: :: :.: : .:.:. ..:.:::.. . :.: .:. . : . . .:
CCDS10 RTTEINFKVGEGFEEET--VDGRKCRSLATWENENKIHCTQTLLEGDGPKTYWTRELAND
60 70 80 90 100 110
120 130
pF1KB6 KLYLELTCGDQVCRQVFKKK
.: : . : :: ... ..
CCDS10 ELILTFGADDVVCTRIYVRE
120 130
>>CCDS83121.1 FABP7 gene_id:2173|Hs108|chr6 (166 aa)
initn: 292 init1: 210 opt: 272 Z-score: 374.3 bits: 75.3 E(32554): 1.6e-14
Smith-Waterman score: 272; 37.8% identity (70.3% similar) in 111 aa overlap (8-118:8-116)
10 20 30 40 50 60
pF1KB6 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRN
::.. ...::. ::::: . ::::... : .:.:.::. .: :::.:
CCDS83 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGEKENRGWKQWIEGDKLYLEL
...: .: :::: : :.:. :..:. .:: :: .:: . .. .. . :. :. .
CCDS83 TEISFQLGEEFDETTA--DDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMVS
70 80 90 100 110
130
pF1KB6 TCGDQVCRQVFKKK
CCDS83 NDNSPFFLVFFSSPHTSHLLPSSSLLLPFFLLPSFFNNTSLARFFNYM
120 130 140 150 160
134 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 13:52:35 2016 done: Sat Nov 5 13:52:35 2016
Total Scan time: 1.530 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]