FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6674, 454 aa
  1>>>pF1KB6674 454 - 454 aa - 454 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.8837+/-0.00105; mu= -5.6808+/- 0.063
 mean_var=423.4347+/-86.284, 0's: 0 Z-trim(116.1): 28  B-trim: 181 in 1/53
 Lambda= 0.062328
 statistics sampled from 16663 (16687) to 16663 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.81), E-opt: 0.2 (0.513), width:  16
 Scan time:  3.010

The best scores are:                                      opt bits E(32554)
CCDS13035.1 PCED1A gene_id:64773|Hs108|chr20       ( 454) 3317 312.2 6.8e-85
CCDS59442.1 PCED1A gene_id:64773|Hs108|chr20       ( 403) 2542 242.5   6e-64
CCDS8752.1 PCED1B gene_id:91523|Hs108|chr12        ( 432) 1258 127.1 3.6e-29


>>CCDS13035.1 PCED1A gene_id:64773|Hs108|chr20            (454 aa)
 initn: 3317 init1: 3317 opt: 3317  Z-score: 1637.6  bits: 312.2 E(32554): 6.8e-85
Smith-Waterman score: 3317; 100.0% identity (100.0% similar) in 454 aa overlap (1-454:1-454)

               10        20        30        40        50        60
pF1KB6 MVFCLSSEEPRRPLRSDMVHFQASEVQQLLHNKFVVILGDSIQRAVYKDLVLLLQKDSLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MVFCLSSEEPRRPLRSDMVHFQASEVQQLLHNKFVVILGDSIQRAVYKDLVLLLQKDSLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TAAQLKAKGELSFEQDQLVAGGQLGELHNGTQYREVRQFCSGSGHHLVRFYFLTRVYSEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TAAQLKAKGELSFEQDQLVAGGQLGELHNGTQYREVRQFCSGSGHHLVRFYFLTRVYSEY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LEDVLEELTYGPAPDLVIINSCLWDLSRYGRCSMESYRENLERVFVRMDQVLPDSCLLVW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LEDVLEELTYGPAPDLVIINSCLWDLSRYGRCSMESYRENLERVFVRMDQVLPDSCLLVW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 NMAMPLGERITGGFLLPELQPLAGSLRRDVVEGNFYSATLAGDHCFDVLDLHFHFRHAVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NMAMPLGERITGGFLLPELQPLAGSLRRDVVEGNFYSATLAGDHCFDVLDLHFHFRHAVQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 HRHRDGVHWDQHAHRHLSHLLLTHVADAWGVELPKRGYPPDPWIEDWAEMNHPFQGSHRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HRHRDGVHWDQHAHRHLSHLLLTHVADAWGVELPKRGYPPDPWIEDWAEMNHPFQGSHRQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 TPDFGEHLALLPPPPSSLPPPMPFPYPLPQPSPPPLFPPLPQDTPFFPGQPFPPHEFFNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TPDFGEHLALLPPPPSSLPPPMPFPYPLPQPSPPPLFPPLPQDTPFFPGQPFPPHEFFNY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 NPVEDFSMPPHLGCGPGVNFVPGPLPPPIPGPNPHGQHWGPVVHRGMPRYVPNSPYHVRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NPVEDFSMPPHLGCGPGVNFVPGPLPPPIPGPNPHGQHWGPVVHRGMPRYVPNSPYHVRR
              370       380       390       400       410       420

              430       440       450    
pF1KB6 MGGPCRQRLRHSERLIHTYKLDRRPPAHSGTWPG
       ::::::::::::::::::::::::::::::::::
CCDS13 MGGPCRQRLRHSERLIHTYKLDRRPPAHSGTWPG
              430       440       450    

>>CCDS59442.1 PCED1A gene_id:64773|Hs108|chr20            (403 aa)
 initn: 2542 init1: 2542 opt: 2542  Z-score: 1261.6  bits: 242.5 E(32554): 6e-64
Smith-Waterman score: 2857; 88.8% identity (88.8% similar) in 454 aa overlap (1-454:1-403)

               10        20        30        40        50        60
pF1KB6 MVFCLSSEEPRRPLRSDMVHFQASEVQQLLHNKFVVILGDSIQRAVYKDLVLLLQKDSLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MVFCLSSEEPRRPLRSDMVHFQASEVQQLLHNKFVVILGDSIQRAVYKDLVLLLQKDSLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TAAQLKAKGELSFEQDQLVAGGQLGELHNGTQYREVRQFCSGSGHHLVRFYFLTRVYSEY
       ::::::::                                                   :
CCDS59 TAAQLKAK---------------------------------------------------Y
                                                                   

              130       140       150       160       170       180
pF1KB6 LEDVLEELTYGPAPDLVIINSCLWDLSRYGRCSMESYRENLERVFVRMDQVLPDSCLLVW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LEDVLEELTYGPAPDLVIINSCLWDLSRYGRCSMESYRENLERVFVRMDQVLPDSCLLVW
      70        80        90       100       110       120         

              190       200       210       220       230       240
pF1KB6 NMAMPLGERITGGFLLPELQPLAGSLRRDVVEGNFYSATLAGDHCFDVLDLHFHFRHAVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 NMAMPLGERITGGFLLPELQPLAGSLRRDVVEGNFYSATLAGDHCFDVLDLHFHFRHAVQ
     130       140       150       160       170       180         

              250       260       270       280       290       300
pF1KB6 HRHRDGVHWDQHAHRHLSHLLLTHVADAWGVELPKRGYPPDPWIEDWAEMNHPFQGSHRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 HRHRDGVHWDQHAHRHLSHLLLTHVADAWGVELPKRGYPPDPWIEDWAEMNHPFQGSHRQ
     190       200       210       220       230       240         

              310       320       330       340       350       360
pF1KB6 TPDFGEHLALLPPPPSSLPPPMPFPYPLPQPSPPPLFPPLPQDTPFFPGQPFPPHEFFNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 TPDFGEHLALLPPPPSSLPPPMPFPYPLPQPSPPPLFPPLPQDTPFFPGQPFPPHEFFNY
     250       260       270       280       290       300         

              370       380       390       400       410       420
pF1KB6 NPVEDFSMPPHLGCGPGVNFVPGPLPPPIPGPNPHGQHWGPVVHRGMPRYVPNSPYHVRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 NPVEDFSMPPHLGCGPGVNFVPGPLPPPIPGPNPHGQHWGPVVHRGMPRYVPNSPYHVRR
     310       320       330       340       350       360         

              430       440       450    
pF1KB6 MGGPCRQRLRHSERLIHTYKLDRRPPAHSGTWPG
       ::::::::::::::::::::::::::::::::::
CCDS59 MGGPCRQRLRHSERLIHTYKLDRRPPAHSGTWPG
     370       380       390       400   

>>CCDS8752.1 PCED1B gene_id:91523|Hs108|chr12             (432 aa)
 initn: 719 init1: 589 opt: 1258  Z-score: 637.2  bits: 127.1 E(32554): 3.6e-29
Smith-Waterman score: 1382; 54.4% identity (70.4% similar) in 439 aa overlap (18-434:1-421)

               10        20        30        40        50        60
pF1KB6 MVFCLSSEEPRRPLRSDMVHFQASEVQQLLHNKFVVILGDSIQRAVYKDLVLLLQKDSLL
                        :. ..::::.::::::::::::::..:::::::::::::: ::
CCDS87                  MILLRASEVRQLLHNKFVVILGDSVHRAVYKDLVLLLQKDRLL
                                10        20        30        40   

               70        80        90       100       110       120
pF1KB6 TAAQLKAKGELSFEQDQLVAGGQLGELHNGTQYREVRQFCSGSGHHLVRFYFLTRVYSEY
       : .::.:.:::.::::.:: ::: :..::: .:::::.:   : ::::::::::::::.:
CCDS87 TPGQLRARGELNFEQDELVDGGQRGHMHNGLNYREVREF--RSDHHLVRFYFLTRVYSDY
            50        60        70        80          90       100 

              130        140       150       160       170         
pF1KB6 LEDVLEELTYGP-APDLVIINSCLWDLSRYGRCSMESYRENLERVFVRMDQVLPDSCLLV
       :. .:.::  :  ::::::.::::::.::::  : .:: :::: .:  . ::::.:::::
CCDS87 LQTILKELQSGEHAPDLVIMNSCLWDISRYGPNSWRSYLENLENLFQCLGQVLPESCLLV
             110       120       130       140       150       160 

     180       190       200        210       220       230        
pF1KB6 WNMAMPLGERITGGFLLPELQPLAGS-LRRDVVEGNFYSATLAGDHCFDVLDLHFHFRHA
       :: :::.::..::::: :.:.   .. :. .::..::.::: :  : :::::::::::::
CCDS87 WNTAMPVGEEVTGGFLPPKLRRQKATFLKNEVVKANFHSATEARKHNFDVLDLHFHFRHA
             170       180       190       200       210       220 

      240       250       260       270       280          290     
pF1KB6 VQHRHRDGVHWDQHAHRHLSHLLLTHVADAWGVELPKRGYPPDPWIEDWA---EMNHPFQ
        .. : :::::. ..:: ::.:::.:::::::::::.: .:   ::.      ... : :
CCDS87 RENLHWDGVHWNGRVHRCLSQLLLAHVADAWGVELPHR-HPVGEWIKKKKPGPRVEGPPQ
             230       240       250        260       270       280

         300       310             320          330                
pF1KB6 GSHRQTPDFGEHLALLPPPPSSL--P----PPMPFPY-PL--PQPSPP-------PLFPP
        ..:. :     : : :: ::    :    ::. .:  ::  ::: ::       : :: 
CCDS87 -ANRNHPA----LPLSPPLPSPTYRPLLGFPPQRLPLLPLLSPQPPPPILHHQGMPRFPQ
                   290       300       310       320       330     

     340       350       360       370       380        390        
pF1KB6 LPQDTPFFPGQPFPPHEFFNYNPVEDFSMPPHLGCGPGVNFVPGP-LPPPIPGPNPHGQH
        : :. :   . :   .:. ..   :     : :     ::. :: :: :.  :.:. :.
CCDS87 GPPDACFSSDHTFQSDQFYCHS---DVPSSAHAGFFVEDNFMVGPQLPMPFF-PTPRYQR
         340       350          360       370       380        390 

      400       410       420       430       440       450    
pF1KB6 WGPVVHRGMPRYVPNSPYHVRRMGGPCRQRLRHSERLIHTYKLDRRPPAHSGTWPG
        .::::::. :: : .::       :  :: : :.:                    
CCDS87 PAPVVHRGFGRYRPRGPYT------PWGQRPRPSKRRAPANPEPRPQ         
             400       410             420       430           




454 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:42:46 2016 done: Sat Nov  5 11:42:47 2016
 Total Scan time:  3.010 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]