FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6664, 452 aa
  1>>>pF1KB6664 452 - 452 aa - 452 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.1360+/-0.00112; mu= -13.2014+/- 0.067
 mean_var=398.8199+/-83.729, 0's: 0 Z-trim(114.6): 34  B-trim: 157 in 1/50
 Lambda= 0.064222
 statistics sampled from 15113 (15139) to 15113 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.773), E-opt: 0.2 (0.465), width:  16
 Scan time:  3.870

The best scores are:                                      opt bits E(32554)
CCDS33325.1 GORASP2 gene_id:26003|Hs108|chr2       ( 452) 3003 292.2 7.5e-79
CCDS2681.1 GORASP1 gene_id:64689|Hs108|chr3        ( 440) 1080 114.0 3.2e-25


>>CCDS33325.1 GORASP2 gene_id:26003|Hs108|chr2            (452 aa)
 initn: 3003 init1: 3003 opt: 3003  Z-score: 1529.1  bits: 292.2 E(32554): 7.5e-79
Smith-Waterman score: 3003; 100.0% identity (100.0% similar) in 452 aa overlap (1-452:1-452)

               10        20        30        40        50        60
pF1KB6 MGSSQSVEIPGGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MGSSQSVEIPGGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ANVEKPVKMLIYSSKTLELRETSVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ANVEKPVKMLIYSSKTLELRETSVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 NSPAALAGLRPHSDYIIGADTVMNESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NSPAALAGLRPHSDYIIGADTVMNESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 NSAWGGEGSLGCGIGYGYLHRIPTRPFEEGKKISLPGQMAGTPITPLKDGFTEVQLSSVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NSAWGGEGSLGCGIGYGYLHRIPTRPFEEGKKISLPGQMAGTPITPLKDGFTEVQLSSVN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 PPSLSPPGTTGIEQSLTGLSISSTPPAVSSVLSTGVPTVPLLPPQVNQSLTSVPPMNPAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PPSLSPPGTTGIEQSLTGLSISSTPPAVSSVLSTGVPTVPLLPPQVNQSLTSVPPMNPAT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 TLPGLMPLPAGLPNLPNLNLNLPAPHIMPGVGLPELVNPGLPPLPSMPPRNLPGIAPLPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TLPGLMPLPAGLPNLPNLNLNLPAPHIMPGVGLPELVNPGLPPLPSMPPRNLPGIAPLPL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 PSEFLPSFPLVPESSSAASSGELLSSLPPTSNAPSDPATTTAKADAASSLTVDVTPPTAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PSEFLPSFPLVPESSSAASSGELLSSLPPTSNAPSDPATTTAKADAASSLTVDVTPPTAK
              370       380       390       400       410       420

              430       440       450  
pF1KB6 APTTVEDRVGDSTPVSEKPVSAAVDANASESP
       ::::::::::::::::::::::::::::::::
CCDS33 APTTVEDRVGDSTPVSEKPVSAAVDANASESP
              430       440       450  

>>CCDS2681.1 GORASP1 gene_id:64689|Hs108|chr3             (440 aa)
 initn: 1091 init1: 1038 opt: 1080  Z-score: 566.4  bits: 114.0 E(32554): 3.2e-25
Smith-Waterman score: 1100; 45.3% identity (65.8% similar) in 430 aa overlap (1-422:1-398)

               10        20        30        40        50        60
pF1KB6 MGSSQSVEIPGGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLK
       :: . :.: :.::.::.:.  ::::::...:::::.::::..:. :::::.::::: :::
CCDS26 MGLGVSAEQPAGGAEGFHLHGVQENSPAQQAGLEPYFDFIITIGHSRLNKENDTLKALLK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ANVEKPVKMLIYSSKTLELRETSVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVES
       ::::::::. ... ::...::. :.:::.::::::::.:.:::::  :.:.:::::.:: 
CCDS26 ANVEKPVKLEVFNMKTMRVREVEVVPSNMWGGQGLLGASVRFCSFRRASEQVWHVLDVEP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 NSPAALAGLRPHSDYIIGADTVMNESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITP
       .::::::::::..::..:.: ...::::.:.:::.::.:::::.:::. .:.:::: .::
CCDS26 SSPAALAGLRPYTDYVVGSDQILQESEDFFTLIESHEGKPLKLMVYNSKSDSCREVTVTP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 NSAWGGEGSLGCGIGYGYLHRIPTRPFEEGKKISLPGQMAGTPITPLKDGFTEVQLSSVN
       :.::::::::::::::::::::::.:    ::   ::     : . :  :        . 
CCDS26 NAAWGGEGSLGCGIGYGYLHRIPTQPPSYHKKP--PGT---PPPSALPLG--------AP
              190       200       210            220               

              250       260       270       280       290          
pF1KB6 PPSLSPPGTTGIEQSLTGLSISSTPPAVSSVLSTGVPTVPLLPPQVNQSLTSVP-PMNPA
       ::.  ::: :  :.: .  . :     . ..:.  .:   .  :        .: : .:.
CCDS26 PPDALPPGPTP-EDSPSLETGSRQSDYMEALLQ--APGSSMEDP--------LPGPGSPS
       230        240       250         260               270      

     300       310       320          330           340       350  
pF1KB6 TTLPGLMPLPAGLPNLPNLNLNLPAP--HIM-PGV----GLPELVNPGLPPLPSMPPRNL
        . :     : :::.. .  :. : :  ..: ::     :.  : : .    ::.:  . 
CCDS26 HSAPD----PDGLPHFMETPLQPPPPVQRVMDPGFLDVSGISLLDNSNASVWPSLPSSTE
        280           290       300       310       320       330  

            360       370       380       390       400       410  
pF1KB6 PGIAPLPLPSEFLPSFPLVPESSSAASSGELLSSLPPTSNAPSDPATTTAKADAASSLTV
          . .   .   :   .   :::   .::   :      .  :   . :.::   .::.
CCDS26 LTTTAVSTSG---PE-DICSSSSSHERGGEATWSGSEFEVSFLDSPGAQAQADHLPQLTL
            340           350       360       370       380        

            420       430       440       450              
pF1KB6 DVTPPTAKAPTTVEDRVGDSTPVSEKPVSAAVDANASESP            
         .  .: .:                                          
CCDS26 PDSLTSAASPEDGLSAELLEAQAEEEPASTEGLDTGTEAEGLDSQAQISTTE
      390       400       410       420       430       440




452 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:41:02 2016 done: Sat Nov  5 11:41:03 2016
 Total Scan time:  3.870 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]