FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6660, 451 aa
  1>>>pF1KB6660 451 - 451 aa - 451 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2059+/-0.000846; mu= 14.1574+/- 0.051
 mean_var=88.8763+/-17.859, 0's: 0 Z-trim(108.3): 12  B-trim: 0 in 0/51
 Lambda= 0.136045
 statistics sampled from 10120 (10124) to 10120 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.311), width:  16
 Scan time:  2.110

The best scores are:                                      opt bits E(32554)
CCDS34736.1 IFRD1 gene_id:3475|Hs108|chr7          ( 451) 2957 590.3 1.3e-168
CCDS56504.1 IFRD1 gene_id:3475|Hs108|chr7          ( 401) 2626 525.3 4.3e-149
CCDS77746.1 IFRD2 gene_id:7866|Hs108|chr3          ( 506) 1433 291.2 1.6e-78


>>CCDS34736.1 IFRD1 gene_id:3475|Hs108|chr7               (451 aa)
 initn: 2957 init1: 2957 opt: 2957  Z-score: 3140.5  bits: 590.3 E(32554): 1.3e-168
Smith-Waterman score: 2957; 100.0% identity (100.0% similar) in 451 aa overlap (1-451:1-451)

               10        20        30        40        50        60
pF1KB6 MPKNKKRNTPHRGSSAGGGGSGAAAATAATAGGQHRNVQPFSDEDASIETMSHCSGYSDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MPKNKKRNTPHRGSSAGGGGSGAAAATAATAGGQHRNVQPFSDEDASIETMSHCSGYSDP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SSFAEDGPEVLDEEGTQEDLEYKLKGLIDLTLDKSAKTRQAALEGIKNALASKMLYEFIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SSFAEDGPEVLDEEGTQEDLEYKLKGLIDLTLDKSAKTRQAALEGIKNALASKMLYEFIL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ERRMTLTDSIERCLKKGKSDEQRAAAALASVLCIQLGPGIESEEILKTLGPILKKIICDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ERRMTLTDSIERCLKKGKSDEQRAAAALASVLCIQLGPGIESEEILKTLGPILKKIICDG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SASMQARQTCATCFGVCCFIATDDITELYSTLECLENIFTKSYLKEKDTTVICSTPNTVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SASMQARQTCATCFGVCCFIATDDITELYSTLECLENIFTKSYLKEKDTTVICSTPNTVL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 HISSLLAWTLLLTICPINEVKKKLEMHFHKLPSLLSCDDVNMRIAAGESLALLFELARGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 HISSLLAWTLLLTICPINEVKKKLEMHFHKLPSLLSCDDVNMRIAAGESLALLFELARGI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 ESDFFYEDMESLTQMLRALATDGNKHRAKVDKRKQRSVFRDVLRAVEERDFPTETIKFGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ESDFFYEDMESLTQMLRALATDGNKHRAKVDKRKQRSVFRDVLRAVEERDFPTETIKFGP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 ERMYIDCWVKKHTYDTFKEVLGSGMQYHLQSNEFLRNVFELGPPVMLDAATLKTMKISRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ERMYIDCWVKKHTYDTFKEVLGSGMQYHLQSNEFLRNVFELGPPVMLDAATLKTMKISRF
              370       380       390       400       410       420

              430       440       450 
pF1KB6 ERHLYNSAAFKARTKARSKCRDKRADVGEFF
       :::::::::::::::::::::::::::::::
CCDS34 ERHLYNSAAFKARTKARSKCRDKRADVGEFF
              430       440       450 

>>CCDS56504.1 IFRD1 gene_id:3475|Hs108|chr7               (401 aa)
 initn: 2626 init1: 2626 opt: 2626  Z-score: 2790.1  bits: 525.3 E(32554): 4.3e-149
Smith-Waterman score: 2626; 100.0% identity (100.0% similar) in 401 aa overlap (51-451:1-401)

               30        40        50        60        70        80
pF1KB6 SGAAAATAATAGGQHRNVQPFSDEDASIETMSHCSGYSDPSSFAEDGPEVLDEEGTQEDL
                                     ::::::::::::::::::::::::::::::
CCDS56                               MSHCSGYSDPSSFAEDGPEVLDEEGTQEDL
                                             10        20        30

               90       100       110       120       130       140
pF1KB6 EYKLKGLIDLTLDKSAKTRQAALEGIKNALASKMLYEFILERRMTLTDSIERCLKKGKSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 EYKLKGLIDLTLDKSAKTRQAALEGIKNALASKMLYEFILERRMTLTDSIERCLKKGKSD
               40        50        60        70        80        90

              150       160       170       180       190       200
pF1KB6 EQRAAAALASVLCIQLGPGIESEEILKTLGPILKKIICDGSASMQARQTCATCFGVCCFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 EQRAAAALASVLCIQLGPGIESEEILKTLGPILKKIICDGSASMQARQTCATCFGVCCFI
              100       110       120       130       140       150

              210       220       230       240       250       260
pF1KB6 ATDDITELYSTLECLENIFTKSYLKEKDTTVICSTPNTVLHISSLLAWTLLLTICPINEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 ATDDITELYSTLECLENIFTKSYLKEKDTTVICSTPNTVLHISSLLAWTLLLTICPINEV
              160       170       180       190       200       210

              270       280       290       300       310       320
pF1KB6 KKKLEMHFHKLPSLLSCDDVNMRIAAGESLALLFELARGIESDFFYEDMESLTQMLRALA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KKKLEMHFHKLPSLLSCDDVNMRIAAGESLALLFELARGIESDFFYEDMESLTQMLRALA
              220       230       240       250       260       270

              330       340       350       360       370       380
pF1KB6 TDGNKHRAKVDKRKQRSVFRDVLRAVEERDFPTETIKFGPERMYIDCWVKKHTYDTFKEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TDGNKHRAKVDKRKQRSVFRDVLRAVEERDFPTETIKFGPERMYIDCWVKKHTYDTFKEV
              280       290       300       310       320       330

              390       400       410       420       430       440
pF1KB6 LGSGMQYHLQSNEFLRNVFELGPPVMLDAATLKTMKISRFERHLYNSAAFKARTKARSKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LGSGMQYHLQSNEFLRNVFELGPPVMLDAATLKTMKISRFERHLYNSAAFKARTKARSKC
              340       350       360       370       380       390

              450 
pF1KB6 RDKRADVGEFF
       :::::::::::
CCDS56 RDKRADVGEFF
              400 

>>CCDS77746.1 IFRD2 gene_id:7866|Hs108|chr3               (506 aa)
 initn: 1422 init1: 816 opt: 1433  Z-score: 1523.1  bits: 291.2 E(32554): 1.6e-78
Smith-Waterman score: 1433; 50.6% identity (78.1% similar) in 453 aa overlap (1-447:65-505)

                                             10        20        30
pF1KB6                               MPKNKKRNTPHRGSSAGGGGSGAAAATAAT
                                     ::. .: :: ..:..  :::  : ... : 
CCDS77 SAQRTGRRLVGLEPTPTGSLTPRPPRPVPGMPRARKGNTLRKGGQRRGGG--ARSSAQAD
           40        50        60        70        80          90  

               40           50        60          70        80     
pF1KB6 AGGQHRNVQPFSDEDASIE---TMSHCSGYSDPSSFAED--GPEVLDEEGTQEDLEYKLK
       .:.        ::..:. :   : :.:   :  :. :::  : .:.::.: ::::: :::
CCDS77 SGS--------SDDEAASEARSTASECP--SLLSTTAEDSLGGDVVDEQGQQEDLEEKLK
                    100       110         120       130       140  

          90       100       110       120       130       140     
pF1KB6 GLIDLTLDKSAKTRQAALEGIKNALASKMLYEFILERRMTLTDSIERCLKKGKSDEQRAA
         .:   ::::::::.:::... ::::..: .:.::::.::.:..:.::::::..::  :
CCDS77 EYVDCLTDKSAKTRQGALESLRLALASRLLPDFLLERRLTLADALEKCLKKGKGEEQALA
            150       160       170       180       190       200  

         150       160       170       180       190       200     
pF1KB6 AALASVLCIQLGPGIESEEILKTLGPILKKIICDGSASMQARQTCATCFGVCCFIATDDI
       ::. ..::.::::: ..::....: :.: ... :..::  ::  ::. .:. :..:. ::
CCDS77 AAVLGLLCVQLGPGPKGEELFHSLQPLLVSVLSDSTASPAARLHCASALGLGCYVAAADI
            210       220       230       240       250       260  

         210       220        230       240       250       260    
pF1KB6 TELYSTLECLENIFTKSY-LKEKDTTVICSTPNTVLHISSLLAWTLLLTICPINEVKKKL
        .: : : :::..:.. : :  ..:. .  .    :  ..: ::.::::::: ..... :
CCDS77 QDLVSCLACLESVFSRFYGLGGSSTSPVVPASLHGLLSAALQAWALLLTICPSTQISHIL
            270       280       290       300       310       320  

          270       280       290       300       310       320    
pF1KB6 EMHFHKLPSLLSCDDVNMRIAAGESLALLFELARGIESDFFYEDMESLTQMLRALATDGN
       . .. .::.::: ..::.::::::..:::::::: .: .: :::::.: ..::.::::.:
CCDS77 DRQLPRLPQLLSSESVNLRIAAGETIALLFELARDLEEEFVYEDMEALCSVLRTLATDSN
            330       340       350       360       370       380  

          330       340       350       360       370       380    
pF1KB6 KHRAKVDKRKQRSVFRDVLRAVEERDFPTETIKFGPERMYIDCWVKKHTYDTFKEVLGSG
       :.:::.:.:.:::.:: ::..::  .   : ..:: : .:.: :.... : .::::::::
CCDS77 KYRAKADRRRQRSTFRAVLHSVEGGECEEEIVRFGFEVLYMDSWARHRIYAAFKEVLGSG
            390       400       410       420       430       440  

          390       400       410       420       430       440    
pF1KB6 MQYHLQSNEFLRNVFELGPPVMLDAATLKTMKISRFERHLYNSAAFKARTKARSKCRDKR
       :..:::.::.::..: ::: ..:::..::. :. :::.::::.:::::::::::. ::::
CCDS77 MHHHLQNNELLRDIFGLGPVLLLDATALKACKVPRFEKHLYNAAAFKARTKARSRVRDKR
            450       460       470       480       490       500  

          450 
pF1KB6 ADVGEFF
       ::.    
CCDS77 ADIL   
              




451 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:18:26 2016 done: Sat Nov  5 11:18:27 2016
 Total Scan time:  2.110 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]