FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6657, 423 aa
  1>>>pF1KB6657 423 - 423 aa - 423 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8441+/-0.00121; mu= 9.1067+/- 0.071
 mean_var=132.6759+/-28.380, 0's: 0 Z-trim(104.8): 164  B-trim: 58 in 1/51
 Lambda= 0.111347
 statistics sampled from 7886 (8083) to 7886 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.619), E-opt: 0.2 (0.248), width:  16
 Scan time:  2.340

The best scores are:                                      opt bits E(32554)
CCDS2356.1 WDR12 gene_id:55759|Hs108|chr2          ( 423) 2855 470.8 1.1e-132


>>CCDS2356.1 WDR12 gene_id:55759|Hs108|chr2               (423 aa)
 initn: 2855 init1: 2855 opt: 2855  Z-score: 2495.6  bits: 470.8 E(32554): 1.1e-132
Smith-Waterman score: 2855; 100.0% identity (100.0% similar) in 423 aa overlap (1-423:1-423)

               10        20        30        40        50        60
pF1KB6 MAQLQTRFYTDNKKYAVDDVPFSIPAASEIADLSNIINKLLKDKNEFHKHVEFDFLIKGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 MAQLQTRFYTDNKKYAVDDVPFSIPAASEIADLSNIINKLLKDKNEFHKHVEFDFLIKGQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 FLRMPLDKHMEMENISSEEVVEIEYVEKYTAPQPEQCMFHDDWISSIKGAEEWILTGSYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 FLRMPLDKHMEMENISSEEVVEIEYVEKYTAPQPEQCMFHDDWISSIKGAEEWILTGSYD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KTSRIWSLEGKSIMTIVGHTDVVKDVAWVKKDSLSCLLLSASMDQTILLWEWNVERNKVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 KTSRIWSLEGKSIMTIVGHTDVVKDVAWVKKDSLSCLLLSASMDQTILLWEWNVERNKVK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 ALHCCRGHAGSVDSIAVDGSGTKFCSGSWDKMLKIWSTVPTDEEDEMEESTNRPRKKQKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 ALHCCRGHAGSVDSIAVDGSGTKFCSGSWDKMLKIWSTVPTDEEDEMEESTNRPRKKQKT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 EQLGLTRTPIVTLSGHMEAVSSVLWSDAEEICSASWDHTIRVWDVESGSLKSTLTGNKVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 EQLGLTRTPIVTLSGHMEAVSSVLWSDAEEICSASWDHTIRVWDVESGSLKSTLTGNKVF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 NCISYSPLCKRLASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQLIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 NCISYSPLCKRLASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQLIS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 GSLDNIVKLWDTRSCKAPLYDLAAHEDKVLSVDWTDTGLLLSGGADNKLYSYRYSPTTSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 GSLDNIVKLWDTRSCKAPLYDLAAHEDKVLSVDWTDTGLLLSGGADNKLYSYRYSPTTSH
              370       380       390       400       410       420

          
pF1KB6 VGA
       :::
CCDS23 VGA
          




423 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:17:11 2016 done: Sat Nov  5 11:17:11 2016
 Total Scan time:  2.340 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]