Result of FASTA (ccds) for
pF1KB6635
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6635, 418 aa
1>>>pF1KB6635 418 - 418 aa - 418 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9538+/-0.000827; mu= 14.8471+/- 0.050
mean_var=87.1946+/-16.836, 0's: 0 Z-trim(108.3): 40 B-trim: 0 in 0/53
Lambda= 0.137350
statistics sampled from 10062 (10096) to 10062 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.667), E-opt: 0.2 (0.31), width: 16
Scan time: 3.040
The best scores are: opt bits E(32554)
CCDS41942.1 SNX6 gene_id:58533|Hs108|chr14 ( 418) 2711 547.1 1.2e-155
CCDS9648.1 SNX6 gene_id:58533|Hs108|chr14 ( 290) 1848 376.0 2.6e-104
CCDS8113.2 SNX32 gene_id:254122|Hs108|chr11 ( 403) 1824 371.3 9.3e-103
CCDS13130.1 SNX5 gene_id:27131|Hs108|chr20 ( 404) 1772 361.0 1.2e-99
>>CCDS41942.1 SNX6 gene_id:58533|Hs108|chr14 (418 aa)
initn: 2711 init1: 2711 opt: 2711 Z-score: 2908.0 bits: 547.1 E(32554): 1.2e-155
Smith-Waterman score: 2711; 100.0% identity (100.0% similar) in 418 aa overlap (1-418:1-418)
10 20 30 40 50 60
pF1KB6 MRACAGPRLGAAMMEGLDDGPDFLSEEDRGLKAINVDLQSDAALQVDISDALSERDKVKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MRACAGPRLGAAMMEGLDDGPDFLSEEDRGLKAINVDLQSDAALQVDISDALSERDKVKF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 KLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRRDLNFHVFLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRRDLNFHVFLE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 YNQDLSVRGKNKKEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 YNQDLSVRGKNKKEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLLEYHNRVKDAS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 AKSDRMTRSHKSAADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVSADE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 AKSDRMTRSHKSAADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVSADE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 DLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETSQQLCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETSQQLCC
310 320 330 340 350 360
370 380 390 400 410
pF1KB6 QKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCLAVLNGDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCLAVLNGDT
370 380 390 400 410
>>CCDS9648.1 SNX6 gene_id:58533|Hs108|chr14 (290 aa)
initn: 1848 init1: 1848 opt: 1848 Z-score: 1986.1 bits: 376.0 E(32554): 2.6e-104
Smith-Waterman score: 1848; 100.0% identity (100.0% similar) in 290 aa overlap (129-418:1-290)
100 110 120 130 140 150
pF1KB6 AGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEV
::::::::::::::::::::::::::::::
CCDS96 MTKEEFTKMKQELEAEYLAIFKKTVAMHEV
10 20 30
160 170 180 190 200 210
pF1KB6 FLCRVAAHPILRRDLNFHVFLEYNQDLSVRGKNKKEKLEDFFKNMVKSADGVIVSGVKDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 FLCRVAAHPILRRDLNFHVFLEYNQDLSVRGKNKKEKLEDFFKNMVKSADGVIVSGVKDV
40 50 60 70 80 90
220 230 240 250 260 270
pF1KB6 DDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNRIGSSLYALGTQDSTDICKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 DDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNRIGSSLYALGTQDSTDICKF
100 110 120 130 140 150
280 290 300 310 320 330
pF1KB6 FLKVSELFDKTRKIEARVSADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 FLKVSELFDKTRKIEARVSADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKA
160 170 180 190 200 210
340 350 360 370 380 390
pF1KB6 LDKARAKNKDVLQAETSQQLCCQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 LDKARAKNKDVLQAETSQQLCCQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELK
220 230 240 250 260 270
400 410
pF1KB6 HAKGNLQLLQNCLAVLNGDT
::::::::::::::::::::
CCDS96 HAKGNLQLLQNCLAVLNGDT
280 290
>>CCDS8113.2 SNX32 gene_id:254122|Hs108|chr11 (403 aa)
initn: 1838 init1: 946 opt: 1824 Z-score: 1958.3 bits: 371.3 E(32554): 9.3e-103
Smith-Waterman score: 1824; 70.5% identity (91.2% similar) in 386 aa overlap (35-417:17-402)
10 20 30 40 50 60
pF1KB6 AGPRLGAAMMEGLDDGPDFLSEEDRGLKAINVDLQSDAALQVDISDALSERDKVKFTVHT
.::::.:..:::.::::.::::::::::.:
CCDS81 METYAEVGKEGKPSCASVDLQGDSSLQVEISDAVSERDKVKFTVQT
10 20 30 40
70 80 90 100 110 120
pF1KB6 KSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQKLGE
:: ::.: :.::::::::::::::::..::::.::: :::::::::::.:::::::::::
CCDS81 KSCLPHFAQTEFSVVRQHEEFIWLHDAYVENEEYAGLIIPPAPPRPDFEASREKLQKLGE
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB6 GEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRRDLNFHVFLEYNQD
:..:.:.:::.::::::::::::::::::::::::: :.:::: :::: :: :::::.::
CCDS81 GDSSVTREEFAKMKQELEAEYLAIFKKTVAMHEVFLQRLAAHPTLRRDHNFFVFLEYGQD
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB6 LSVRGKNKKEKLEDFFKNMVKSADGVIV---SGVKDVDDFFEHERTFLLEYHNRVKDASA
:::::::.:: : :..:.::::: ... ::.:.::::::::::::::::.:..::
CCDS81 LSVRGKNRKELLGGFLRNIVKSADEALITGMSGLKEVDDFFEHERTFLLEYHTRIRDACL
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB6 KSDRMTRSHKSAADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVSADED
..::. :.:: :::: :...: .::::. ... :::..:::.. ::.:.::..:::
CCDS81 RADRVMRAHKCLADDYIPISAALSSLGTQEVNQLRTSFLKLAELFERLRKLEGRVASDED
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB6 LKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETSQQLCCQ
:::::.:.::.:.::::::::::: :.:.:::::::::::::..:..: ::. ::::::
CCDS81 LKLSDMLRYYMRDSQAAKDLLYRRLRALADYENANKALDKARTRNREVRPAESHQQLCCQ
290 300 310 320 330 340
370 380 390 400 410
pF1KB6 KFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCLAVLNGDT
.::..:.::::::.:::.:::..:::::.:::::::::::.. .:.: :..:.:.
CCDS81 RFERLSDSAKQELMDFKSRRVSSFRKNLIELAELELKHAKASTLILRNTLVALKGEP
350 360 370 380 390 400
>>CCDS13130.1 SNX5 gene_id:27131|Hs108|chr20 (404 aa)
initn: 1767 init1: 1739 opt: 1772 Z-score: 1902.6 bits: 361.0 E(32554): 1.2e-99
Smith-Waterman score: 1772; 64.5% identity (90.0% similar) in 400 aa overlap (21-417:5-404)
10 20 30 40 50
pF1KB6 MRACAGPRLGAAMMEGLDDGPDFLS--EEDRG-LKAINVDLQSDAALQVDISDALSERDK
:..:. ::::. :....:::. : .::.:: ::::::::
CCDS13 MAAVPELLQQQEEDRSKLRSVSVDLNVDPSLQIDIPDALSERDK
10 20 30 40
60 70 80 90 100 110
pF1KB6 VKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASRE
::::::::..::.:.. ::::.::::.:.::::...:. :::: :::::: .::::. ::
CCDS13 VKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLIETTDYAGLIIPPAPTKPDFDGPRE
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB6 KLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRRDLNFHV
:.:::::::::::::::.::::::::::::.:::::. ::::: :...::.: .: ::::
CCDS13 KMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHV
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB6 FLEYNQDLSVRGKNKKEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLLEYHNRVK
::::.:::::: :: :: . :::..::::: :. .:::.::::::.:..::..:.::.:
CCDS13 FLEYDQDLSVRRKNTKEMFGGFFKSVVKSADEVLFTGVKEVDDFFEQEKNFLINYYNRIK
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB6 DASAKSDRMTRSHKSAADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDKTRKIEARVS
:. .:.:.::::::..:::: . .. :..:. .. : : :..:::.:::.: ::.:.:::
CCDS13 DSCVKADKMTRSHKNVADDYIHTAACLHSLALEEPTVIKKYLLKVAELFEKLRKVEGRVS
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB6 ADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETSQQ
.::::::..::.::. . .:::::::::...:.::::.:::::::: :.::: ::. ::
CCDS13 SDEDLKLTELLRYYMLNIEAAKDLLYRRTKALIDYENSNKALDKARLKSKDVKLAEAHQQ
290 300 310 320 330 340
360 370 380 390 400 410
pF1KB6 LCCQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQNCLAVLNGD
::::::..:::::.:::.:: .:::::::::.:..:::.:::..:..:::.:. .....
CCDS13 ECCQKFEQLSESAKEELINFKRKRVAAFRKNLIEMSELEIKHARNNVSLLQSCIDLFKNN
350 360 370 380 390 400
pF1KB6 T
418 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 11:11:36 2016 done: Sat Nov 5 11:11:37 2016
Total Scan time: 3.040 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]