FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6623, 413 aa
  1>>>pF1KB6623 413 - 413 aa - 413 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.5557+/-0.00119; mu= -0.8719+/- 0.072
 mean_var=261.4660+/-52.916, 0's: 0 Z-trim(109.6): 20  B-trim: 93 in 1/52
 Lambda= 0.079317
 statistics sampled from 10972 (10976) to 10972 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.675), E-opt: 0.2 (0.337), width:  16
 Scan time:  2.020

The best scores are:                                      opt bits E(32554)
CCDS32381.1 CLUAP1 gene_id:23059|Hs108|chr16       ( 413) 2654 317.0 2.1e-86
CCDS81942.1 CLUAP1 gene_id:23059|Hs108|chr16       ( 432) 2330 279.9 3.1e-75
CCDS45398.1 CLUAP1 gene_id:23059|Hs108|chr16       ( 247) 1595 195.6 4.3e-50


>>CCDS32381.1 CLUAP1 gene_id:23059|Hs108|chr16            (413 aa)
 initn: 2654 init1: 2654 opt: 2654  Z-score: 1664.7  bits: 317.0 E(32554): 2.1e-86
Smith-Waterman score: 2654; 100.0% identity (100.0% similar) in 413 aa overlap (1-413:1-413)

               10        20        30        40        50        60
pF1KB6 MSFRDLRNFTEMMRALGYPRHISMENFRTPNFGLVSEVLLWLVKRYEPQTDIPPDVDTEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MSFRDLRNFTEMMRALGYPRHISMENFRTPNFGLVSEVLLWLVKRYEPQTDIPPDVDTEQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DRVFFIKAIAQFMATKAHIKLNTKKLYQADGYAVKELLKITSVLYNAMKTKGMEGSEIVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DRVFFIKAIAQFMATKAHIKLNTKKLYQADGYAVKELLKITSVLYNAMKTKGMEGSEIVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EDVNKFKFDLGSKIADLKAARQLASEITSKGASLYDLLGMEVELREMRTEAIARPLEINE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EDVNKFKFDLGSKIADLKAARQLASEITSKGASLYDLLGMEVELREMRTEAIARPLEINE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 TEKVMRIAIKEILTQVQKTKDLLNNVASDEANLEAKIEKRKLELERNRKRLETLQSVRPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TEKVMRIAIKEILTQVQKTKDLLNNVASDEANLEAKIEKRKLELERNRKRLETLQSVRPC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 FMDEYEKTEEELQKQYDTYLEKFQNLTYLEQQLEDHHRMEQERFEEAKNTLCLIQNKLKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FMDEYEKTEEELQKQYDTYLEKFQNLTYLEQQLEDHHRMEQERFEEAKNTLCLIQNKLKE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 EEKRLLKSGSNDDSDIDIQEDDESDSELEERRLPKPQTAMEMLMQGRPGKRIVGTMQGGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EEKRLLKSGSNDDSDIDIQEDDESDSELEERRLPKPQTAMEMLMQGRPGKRIVGTMQGGD
              310       320       330       340       350       360

              370       380       390       400       410   
pF1KB6 SDDNEDSEESEIDMEDDDDEDDDLEDESISLSPTKPNRRVRKSEPLDESDNDF
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SDDNEDSEESEIDMEDDDDEDDDLEDESISLSPTKPNRRVRKSEPLDESDNDF
              370       380       390       400       410   

>>CCDS81942.1 CLUAP1 gene_id:23059|Hs108|chr16            (432 aa)
 initn: 2399 init1: 2329 opt: 2330  Z-score: 1464.1  bits: 279.9 E(32554): 3.1e-75
Smith-Waterman score: 2606; 95.6% identity (95.6% similar) in 432 aa overlap (1-413:1-432)

               10        20        30        40        50        60
pF1KB6 MSFRDLRNFTEMMRALGYPRHISMENFRTPNFGLVSEVLLWLVKRYEPQTDIPPDVDTEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MSFRDLRNFTEMMRALGYPRHISMENFRTPNFGLVSEVLLWLVKRYEPQTDIPPDVDTEQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DRVFFIKAIAQFMATKAHIKLNTKKLYQADGYAVKELLKITSVLYNAMKTKGMEGSEIVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 DRVFFIKAIAQFMATKAHIKLNTKKLYQADGYAVKELLKITSVLYNAMKTKGMEGSEIVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EDVNKFKFDLGSKIADLKAARQLASEITSKGASLYDLLGMEVELREMRTEAIARPLEINE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 EDVNKFKFDLGSKIADLKAARQLASEITSKGASLYDLLGMEVELREMRTEAIARPLEINE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 TEKVMRIAIKEILTQVQKTKDLLNNVASDEANLEAKIEKRKLELERNRKRLETLQSVRPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 TEKVMRIAIKEILTQVQKTKDLLNNVASDEANLEAKIEKRKLELERNRKRLETLQSVRPC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 FMDEYEKTEEELQKQYDTYLEKFQNLTYLEQQLEDHHRMEQERFEEAKNTLCLIQNKLKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 FMDEYEKTEEELQKQYDTYLEKFQNLTYLEQQLEDHHRMEQERFEEAKNTLCLIQNKLKE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 EEKRLLKSGSNDDSDIDIQEDDESDSELEERRLPKPQTAMEMLMQGRPGKRIVGTMQGGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 EEKRLLKSGSNDDSDIDIQEDDESDSELEERRLPKPQTAMEMLMQGRPGKRIVGTMQGGD
              310       320       330       340       350       360

                                 370       380       390       400 
pF1KB6 SDDN-------------------EDSEESEIDMEDDDDEDDDLEDESISLSPTKPNRRVR
       ::::                   :::::::::::::::::::::::::::::::::::::
CCDS81 SDDNMEAAPALLGKCKTSSSKKQEDSEESEIDMEDDDDEDDDLEDESISLSPTKPNRRVR
              370       380       390       400       410       420

             410   
pF1KB6 KSEPLDESDNDF
       ::::::::::::
CCDS81 KSEPLDESDNDF
              430  

>>CCDS45398.1 CLUAP1 gene_id:23059|Hs108|chr16            (247 aa)
 initn: 1595 init1: 1595 opt: 1595  Z-score: 1012.9  bits: 195.6 E(32554): 4.3e-50
Smith-Waterman score: 1595; 100.0% identity (100.0% similar) in 247 aa overlap (167-413:1-247)

        140       150       160       170       180       190      
pF1KB6 LKAARQLASEITSKGASLYDLLGMEVELREMRTEAIARPLEINETEKVMRIAIKEILTQV
                                     ::::::::::::::::::::::::::::::
CCDS45                               MRTEAIARPLEINETEKVMRIAIKEILTQV
                                             10        20        30

        200       210       220       230       240       250      
pF1KB6 QKTKDLLNNVASDEANLEAKIEKRKLELERNRKRLETLQSVRPCFMDEYEKTEEELQKQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QKTKDLLNNVASDEANLEAKIEKRKLELERNRKRLETLQSVRPCFMDEYEKTEEELQKQY
               40        50        60        70        80        90

        260       270       280       290       300       310      
pF1KB6 DTYLEKFQNLTYLEQQLEDHHRMEQERFEEAKNTLCLIQNKLKEEEKRLLKSGSNDDSDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DTYLEKFQNLTYLEQQLEDHHRMEQERFEEAKNTLCLIQNKLKEEEKRLLKSGSNDDSDI
              100       110       120       130       140       150

        320       330       340       350       360       370      
pF1KB6 DIQEDDESDSELEERRLPKPQTAMEMLMQGRPGKRIVGTMQGGDSDDNEDSEESEIDMED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DIQEDDESDSELEERRLPKPQTAMEMLMQGRPGKRIVGTMQGGDSDDNEDSEESEIDMED
              160       170       180       190       200       210

        380       390       400       410   
pF1KB6 DDDEDDDLEDESISLSPTKPNRRVRKSEPLDESDNDF
       :::::::::::::::::::::::::::::::::::::
CCDS45 DDDEDDDLEDESISLSPTKPNRRVRKSEPLDESDNDF
              220       230       240       




413 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:09:20 2016 done: Sat Nov  5 11:09:20 2016
 Total Scan time:  2.020 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]