FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6617, 412 aa
  1>>>pF1KB6617 412 - 412 aa - 412 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1443+/-0.000975; mu= 7.5230+/- 0.057
 mean_var=103.8811+/-21.786, 0's: 0 Z-trim(107.0): 57  B-trim: 550 in 1/49
 Lambda= 0.125836
 statistics sampled from 9266 (9316) to 9266 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.286), width:  16
 Scan time:  2.410

The best scores are:                                      opt bits E(32554)
CCDS7936.1 RAPSN gene_id:5913|Hs108|chr11          ( 412) 2778 515.2 4.6e-146
CCDS7937.1 RAPSN gene_id:5913|Hs108|chr11          ( 353) 1765 331.2 9.2e-91


>>CCDS7936.1 RAPSN gene_id:5913|Hs108|chr11               (412 aa)
 initn: 2778 init1: 2778 opt: 2778  Z-score: 2735.8  bits: 515.2 E(32554): 4.6e-146
Smith-Waterman score: 2778; 100.0% identity (100.0% similar) in 412 aa overlap (1-412:1-412)

               10        20        30        40        50        60
pF1KB6 MGQDQTKQQIEKGLQLYQSNQTEKALQVWTKVLEKSSDLMGRFRVLGCLVTAHSEMGRYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 MGQDQTKQQIEKGLQLYQSNQTEKALQVWTKVLEKSSDLMGRFRVLGCLVTAHSEMGRYK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EMLKFAVVQIDTARELEDADFLLESYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 EMLKFAVVQIDTARELEDADFLLESYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGAQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LGGQVSLSMGNAFLGLSVFQKALESFEKALRYAHNNDDAMLECRVCCSLGSFYAQVKDYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 LGGQVSLSMGNAFLGLSVFQKALESFEKALRYAHNNDDAMLECRVCCSLGSFYAQVKDYE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 KALFFPCKAAELVNNYGKGWSLKYRAMSQYHMAVAYRLLGRLGSAMECCEESMKIALQHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 KALFFPCKAAELVNNYGKGWSLKYRAMSQYHMAVAYRLLGRLGSAMECCEESMKIALQHG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 DRPLQALCLLCFADIHRSRGDLETAFPRYDSAMSIMTEIGNRLGQVQALLGVAKCWVARK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 DRPLQALCLLCFADIHRSRGDLETAFPRYDSAMSIMTEIGNRLGQVQALLGVAKCWVARK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 ALDKALDAIERAQDLAEEVGNKLSQLKLHCLSESIYRSKGLQRELRAHVVRFHECVEETE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 ALDKALDAIERAQDLAEEVGNKLSQLKLHCLSESIYRSKGLQRELRAHVVRFHECVEETE
              310       320       330       340       350       360

              370       380       390       400       410  
pF1KB6 LYCGLCGESIGEKNSRLQALPCSHIFHLRCLQNNGTRSCPNCRRSSMKPGFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 LYCGLCGESIGEKNSRLQALPCSHIFHLRCLQNNGTRSCPNCRRSSMKPGFV
              370       380       390       400       410  

>>CCDS7937.1 RAPSN gene_id:5913|Hs108|chr11               (353 aa)
 initn: 1765 init1: 1765 opt: 1765  Z-score: 1743.0  bits: 331.2 E(32554): 9.2e-91
Smith-Waterman score: 2272; 85.7% identity (85.7% similar) in 412 aa overlap (1-412:1-353)

               10        20        30        40        50        60
pF1KB6 MGQDQTKQQIEKGLQLYQSNQTEKALQVWTKVLEKSSDLMGRFRVLGCLVTAHSEMGRYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 MGQDQTKQQIEKGLQLYQSNQTEKALQVWTKVLEKSSDLMGRFRVLGCLVTAHSEMGRYK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EMLKFAVVQIDTARELEDADFLLESYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 EMLKFAVVQIDTARELEDADFLLESYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGAQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LGGQVSLSMGNAFLGLSVFQKALESFEKALRYAHNNDDAMLECRVCCSLGSFYAQVKDYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 LGGQVSLSMGNAFLGLSVFQKALESFEKALRYAHNNDDAMLECRVCCSLGSFYAQVKDYE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 KALFFPCKAAELVNNYGKGWSLKYRAMSQYHMAVAYRLLGRLGSAMECCEESMKIALQHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 KALFFPCKAAELVNNYGKGWSLKYRAMSQYHMAVAYRLLGRLGSAMECCEESMKIALQHG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 DRPLQALCLLCFADIHRSRGDLETAFPRYDSAMSIMTEIGNRLGQVQALLGVAKCWVARK
       :::::::::::::::::::::::                                     
CCDS79 DRPLQALCLLCFADIHRSRGDLE-------------------------------------
              250       260                                        

              310       320       330       340       350       360
pF1KB6 ALDKALDAIERAQDLAEEVGNKLSQLKLHCLSESIYRSKGLQRELRAHVVRFHECVEETE
                             ::::::::::::::::::::::::::::::::::::::
CCDS79 ----------------------LSQLKLHCLSESIYRSKGLQRELRAHVVRFHECVEETE
                                 270       280       290       300 

              370       380       390       400       410  
pF1KB6 LYCGLCGESIGEKNSRLQALPCSHIFHLRCLQNNGTRSCPNCRRSSMKPGFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 LYCGLCGESIGEKNSRLQALPCSHIFHLRCLQNNGTRSCPNCRRSSMKPGFV
             310       320       330       340       350   




412 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:02:10 2016 done: Sat Nov  5 17:02:11 2016
 Total Scan time:  2.410 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]