FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6613, 412 aa
  1>>>pF1KB6613 412 - 412 aa - 412 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2028+/-0.000969; mu= 17.6732+/- 0.058
 mean_var=69.5489+/-13.601, 0's: 0 Z-trim(103.9): 23  B-trim: 0 in 0/49
 Lambda= 0.153790
 statistics sampled from 7646 (7657) to 7646 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.61), E-opt: 0.2 (0.235), width:  16
 Scan time:  2.120

The best scores are:                                      opt bits E(32554)
CCDS7669.2 INPP5A gene_id:3632|Hs108|chr10         ( 412) 2808 632.4 2.3e-181


>>CCDS7669.2 INPP5A gene_id:3632|Hs108|chr10              (412 aa)
 initn: 2808 init1: 2808 opt: 2808  Z-score: 3369.6  bits: 632.4 E(32554): 2.3e-181
Smith-Waterman score: 2808; 100.0% identity (100.0% similar) in 412 aa overlap (1-412:1-412)

               10        20        30        40        50        60
pF1KB6 MAGKAAAPGTAVLLVTANVGSLFDDPENLQKNWLREFYQVVHTHKPHFMALHCQEFGGKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MAGKAAAPGTAVLLVTANVGSLFDDPENLQKNWLREFYQVVHTHKPHFMALHCQEFGGKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 YEASMSHVDKFVKELLSSDAMKEYNRARVYLDENYKSQEHFTALGSFYFLHESLKNIYQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 YEASMSHVDKFVKELLSSDAMKEYNRARVYLDENYKSQEHFTALGSFYFLHESLKNIYQF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 DFKAKKYRKVAGKEIYSDTLESTPMLEKEKFPQDYFPECKWSRKGFIRTRWCIADCAFDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 DFKAKKYRKVAGKEIYSDTLESTPMLEKEKFPQDYFPECKWSRKGFIRTRWCIADCAFDL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 VNIHLFHDASNLVAWETSPSVYSGIRHKALGYVLDRIIDQRFEKVSYFVFGDFNFRLDSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 VNIHLFHDASNLVAWETSPSVYSGIRHKALGYVLDRIIDQRFEKVSYFVFGDFNFRLDSK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 SVVETLCTKATMQTVRAADTNEVVKLIFRESDNDRKVMLQLEKKLFDYFNQEVFRDNNGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SVVETLCTKATMQTVRAADTNEVVKLIFRESDNDRKVMLQLEKKLFDYFNQEVFRDNNGT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 ALLEFDKELSVFKDRLYELDISFPPSYPYSEDARQGEQYMNTRCPAWCDRILMSPSAKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 ALLEFDKELSVFKDRLYELDISFPPSYPYSEDARQGEQYMNTRCPAWCDRILMSPSAKEL
              310       320       330       340       350       360

              370       380       390       400       410  
pF1KB6 VLRSESEEKVVTYDHIGPNVCMGDHKPVFLAFRIMPGAGKPHAHVHKCCVVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 VLRSESEEKVVTYDHIGPNVCMGDHKPVFLAFRIMPGAGKPHAHVHKCCVVQ
              370       380       390       400       410  




412 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:06:16 2016 done: Sat Nov  5 11:06:16 2016
 Total Scan time:  2.120 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]