Result of FASTA (omim) for
pF1KB6606
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6606, 431 aa
1>>>pF1KB6606 431 - 431 aa - 431 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0685+/-0.000284; mu= 15.0482+/- 0.018
mean_var=89.7402+/-17.725, 0's: 0 Z-trim(119.7): 4 B-trim: 0 in 0/58
Lambda= 0.135388
statistics sampled from 34008 (34012) to 34008 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.399), width: 16
Scan time: 8.680
The best scores are: opt bits E(85289)
NP_057665 (OMIM: 608388) evolutionarily conserved ( 431) 2981 591.8 1.1e-168
NP_001135936 (OMIM: 608388) evolutionarily conserv ( 296) 1834 367.7 2.3e-101
NP_001230133 (OMIM: 608388) evolutionarily conserv ( 296) 1826 366.1 6.8e-101
NP_001135937 (OMIM: 608388) evolutionarily conserv ( 217) 1304 264.1 2.6e-70
>>NP_057665 (OMIM: 608388) evolutionarily conserved sign (431 aa)
initn: 2981 init1: 2981 opt: 2981 Z-score: 3149.2 bits: 591.8 E(85289): 1.1e-168
Smith-Waterman score: 2981; 100.0% identity (100.0% similar) in 431 aa overlap (1-431:1-431)
10 20 30 40 50 60
pF1KB6 MSWVQATLLARGLCRAWGGTCGAALTGTSISQVPRRLPRGLHCSAAAHSSEQSLVPSPPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MSWVQATLLARGLCRAWGGTCGAALTGTSISQVPRRLPRGLHCSAAAHSSEQSLVPSPPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PRQRPTKALVPFEDLFGQAPGGERDKASFLQTVQKFAEHSVRKRGHIDFIYLALRKMREY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 PRQRPTKALVPFEDLFGQAPGGERDKASFLQTVQKFAEHSVRKRGHIDFIYLALRKMREY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 GVERDLAVYNQLLNIFPKEVFRPRNIIQRIFVHYPRQQECGIAVLEQMENHGVMPNKETE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 GVERDLAVYNQLLNIFPKEVFRPRNIIQRIFVHYPRQQECGIAVLEQMENHGVMPNKETE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 FLLIQIFGRKSYPMLKLVRLKLWFPRFMNVNPFPVPRDLPQDPVELAMFGLRHMEPDLSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 FLLIQIFGRKSYPMLKLVRLKLWFPRFMNVNPFPVPRDLPQDPVELAMFGLRHMEPDLSA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 RVTIYQVPLPKDSTGAADPPQPHIVGIQSPDQQAALARHNPARPVFVEGPFSLWLRNKCV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 RVTIYQVPLPKDSTGAADPPQPHIVGIQSPDQQAALARHNPARPVFVEGPFSLWLRNKCV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 YYHILRADLLPPEEREVEETPEEWNLYYPMQLDLEYVRSGWDNYEFDINEVEEGPVFAMC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 YYHILRADLLPPEEREVEETPEEWNLYYPMQLDLEYVRSGWDNYEFDINEVEEGPVFAMC
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 MAGAHDQATMAKWIQGLQETNPTLAQIPVVFRLAGSTRELQTSSAGLEEPPLPEDHQEED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MAGAHDQATMAKWIQGLQETNPTLAQIPVVFRLAGSTRELQTSSAGLEEPPLPEDHQEED
370 380 390 400 410 420
430
pF1KB6 DNLQRQQQGQS
:::::::::::
NP_057 DNLQRQQQGQS
430
>>NP_001135936 (OMIM: 608388) evolutionarily conserved s (296 aa)
initn: 1855 init1: 1834 opt: 1834 Z-score: 1940.8 bits: 367.7 E(85289): 2.3e-101
Smith-Waterman score: 1834; 100.0% identity (100.0% similar) in 266 aa overlap (1-266:1-266)
10 20 30 40 50 60
pF1KB6 MSWVQATLLARGLCRAWGGTCGAALTGTSISQVPRRLPRGLHCSAAAHSSEQSLVPSPPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSWVQATLLARGLCRAWGGTCGAALTGTSISQVPRRLPRGLHCSAAAHSSEQSLVPSPPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PRQRPTKALVPFEDLFGQAPGGERDKASFLQTVQKFAEHSVRKRGHIDFIYLALRKMREY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PRQRPTKALVPFEDLFGQAPGGERDKASFLQTVQKFAEHSVRKRGHIDFIYLALRKMREY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 GVERDLAVYNQLLNIFPKEVFRPRNIIQRIFVHYPRQQECGIAVLEQMENHGVMPNKETE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVERDLAVYNQLLNIFPKEVFRPRNIIQRIFVHYPRQQECGIAVLEQMENHGVMPNKETE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 FLLIQIFGRKSYPMLKLVRLKLWFPRFMNVNPFPVPRDLPQDPVELAMFGLRHMEPDLSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FLLIQIFGRKSYPMLKLVRLKLWFPRFMNVNPFPVPRDLPQDPVELAMFGLRHMEPDLSA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 RVTIYQVPLPKDSTGAADPPQPHIVGIQSPDQQAALARHNPARPVFVEGPFSLWLRNKCV
::::::::::::::::::::::::::
NP_001 RVTIYQVPLPKDSTGAADPPQPHIVGSGRDAGGVEPLLPDAAGPGVCEEWLGQLRV
250 260 270 280 290
>>NP_001230133 (OMIM: 608388) evolutionarily conserved s (296 aa)
initn: 1826 init1: 1826 opt: 1826 Z-score: 1932.4 bits: 366.1 E(85289): 6.8e-101
Smith-Waterman score: 1826; 100.0% identity (100.0% similar) in 265 aa overlap (1-265:1-265)
10 20 30 40 50 60
pF1KB6 MSWVQATLLARGLCRAWGGTCGAALTGTSISQVPRRLPRGLHCSAAAHSSEQSLVPSPPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSWVQATLLARGLCRAWGGTCGAALTGTSISQVPRRLPRGLHCSAAAHSSEQSLVPSPPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PRQRPTKALVPFEDLFGQAPGGERDKASFLQTVQKFAEHSVRKRGHIDFIYLALRKMREY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PRQRPTKALVPFEDLFGQAPGGERDKASFLQTVQKFAEHSVRKRGHIDFIYLALRKMREY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 GVERDLAVYNQLLNIFPKEVFRPRNIIQRIFVHYPRQQECGIAVLEQMENHGVMPNKETE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVERDLAVYNQLLNIFPKEVFRPRNIIQRIFVHYPRQQECGIAVLEQMENHGVMPNKETE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 FLLIQIFGRKSYPMLKLVRLKLWFPRFMNVNPFPVPRDLPQDPVELAMFGLRHMEPDLSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FLLIQIFGRKSYPMLKLVRLKLWFPRFMNVNPFPVPRDLPQDPVELAMFGLRHMEPDLSA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 RVTIYQVPLPKDSTGAADPPQPHIVGIQSPDQQAALARHNPARPVFVEGPFSLWLRNKCV
:::::::::::::::::::::::::
NP_001 RVTIYQVPLPKDSTGAADPPQPHIVELTCCPRRRGKWKRRRRSGTSTTRCSWTWSM
250 260 270 280 290
>>NP_001135937 (OMIM: 608388) evolutionarily conserved s (217 aa)
initn: 1304 init1: 1304 opt: 1304 Z-score: 1383.3 bits: 264.1 E(85289): 2.6e-70
Smith-Waterman score: 1304; 98.9% identity (99.5% similar) in 189 aa overlap (243-431:29-217)
220 230 240 250 260 270
pF1KB6 FPVPRDLPQDPVELAMFGLRHMEPDLSARVTIYQVPLPKDSTGAADPPQPHIVGIQSPDQ
.: :::::::::::::::::::::::::::
NP_001 MSWVQATLLARGLCRAWGGTCGAALTGTSISQVPLPKDSTGAADPPQPHIVGIQSPDQ
10 20 30 40 50
280 290 300 310 320 330
pF1KB6 QAALARHNPARPVFVEGPFSLWLRNKCVYYHILRADLLPPEEREVEETPEEWNLYYPMQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QAALARHNPARPVFVEGPFSLWLRNKCVYYHILRADLLPPEEREVEETPEEWNLYYPMQL
60 70 80 90 100 110
340 350 360 370 380 390
pF1KB6 DLEYVRSGWDNYEFDINEVEEGPVFAMCMAGAHDQATMAKWIQGLQETNPTLAQIPVVFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLEYVRSGWDNYEFDINEVEEGPVFAMCMAGAHDQATMAKWIQGLQETNPTLAQIPVVFR
120 130 140 150 160 170
400 410 420 430
pF1KB6 LAGSTRELQTSSAGLEEPPLPEDHQEEDDNLQRQQQGQS
:::::::::::::::::::::::::::::::::::::::
NP_001 LAGSTRELQTSSAGLEEPPLPEDHQEEDDNLQRQQQGQS
180 190 200 210
431 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 11:33:02 2016 done: Sat Nov 5 11:33:03 2016
Total Scan time: 8.680 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]