Result of FASTA (omim) for
pF1KB6583
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6583, 377 aa
1>>>pF1KB6583 377 - 377 aa - 377 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.2215+/-0.000304; mu= 0.2341+/- 0.019
mean_var=196.6172+/-38.755, 0's: 0 Z-trim(123.5): 6 B-trim: 75 in 1/60
Lambda= 0.091467
statistics sampled from 43499 (43506) to 43499 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.803), E-opt: 0.2 (0.51), width: 16
Scan time: 9.620
The best scores are: opt bits E(85289)
NP_004556 (OMIM: 601791,614887) peroxisomal membra ( 377) 2459 336.2 7.8e-92
XP_011539879 (OMIM: 601791,614887) PREDICTED: pero ( 391) 2384 326.3 7.6e-89
XP_011539880 (OMIM: 601791,614887) PREDICTED: pero ( 358) 2278 312.3 1.2e-84
XP_005263527 (OMIM: 601791,614887) PREDICTED: pero ( 313) 2055 282.8 7.4e-76
XP_011539882 (OMIM: 601791,614887) PREDICTED: pero ( 334) 1812 250.8 3.5e-66
XP_011539881 (OMIM: 601791,614887) PREDICTED: pero ( 348) 1812 250.8 3.6e-66
>>NP_004556 (OMIM: 601791,614887) peroxisomal membrane p (377 aa)
initn: 2459 init1: 2459 opt: 2459 Z-score: 1769.7 bits: 336.2 E(85289): 7.8e-92
Smith-Waterman score: 2459; 100.0% identity (100.0% similar) in 377 aa overlap (1-377:1-377)
10 20 30 40 50 60
pF1KB6 MASSEQAEQPSQPSSTPGSENVLPREPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MASSEQAEQPSQPSSTPGSENVLPREPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 EEIDMAFQQSGTAADEPSSLGPATQVVPVQPPHLISQPYSPAGSRWRDYGALAIIMAGIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EEIDMAFQQSGTAADEPSSLGPATQVVPVQPPHLISQPYSPAGSRWRDYGALAIIMAGIA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 FGFHQLYKKYLLPLILGGREDRKQLERMEAGLSELSGSVAQTVTQLQTTLASVQELLIQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 FGFHQLYKKYLLPLILGGREDRKQLERMEAGLSELSGSVAQTVTQLQTTLASVQELLIQQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 QQKIQELAHELAAAKATTSTNWILESQNINELKSEINSLKGLLLNRRQFPPSPSAPKIPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QQKIQELAHELAAAKATTSTNWILESQNINELKSEINSLKGLLLNRRQFPPSPSAPKIPS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 WQIPVKSPSPSSPAAVNHHSSSDISPVSNESTSSSPGKEGHSPEGSTVTYHLLGPQEEGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 WQIPVKSPSPSSPAAVNHHSSSDISPVSNESTSSSPGKEGHSPEGSTVTYHLLGPQEEGE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 GVVDVKGQVRMEVQGEEEKREDKEDEEDEEDDDVSHVDEEDCLGVQREDRRGGDGQINEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 GVVDVKGQVRMEVQGEEEKREDKEDEEDEEDDDVSHVDEEDCLGVQREDRRGGDGQINEQ
310 320 330 340 350 360
370
pF1KB6 VEKLRRPEGASNESERD
:::::::::::::::::
NP_004 VEKLRRPEGASNESERD
370
>>XP_011539879 (OMIM: 601791,614887) PREDICTED: peroxiso (391 aa)
initn: 2384 init1: 2384 opt: 2384 Z-score: 1716.0 bits: 326.3 E(85289): 7.6e-89
Smith-Waterman score: 2384; 100.0% identity (100.0% similar) in 365 aa overlap (13-377:27-391)
10 20 30 40
pF1KB6 MASSEQAEQPSQPSSTPGSENVLPREPLIATAVKFLQNSRVRQSPL
::::::::::::::::::::::::::::::::::
XP_011 MDTRRWGSWGHLRVCSPQDSFSFWATPSSTPGSENVLPREPLIATAVKFLQNSRVRQSPL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB6 ATRRAFLKKKGLTDEEIDMAFQQSGTAADEPSSLGPATQVVPVQPPHLISQPYSPAGSRW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ATRRAFLKKKGLTDEEIDMAFQQSGTAADEPSSLGPATQVVPVQPPHLISQPYSPAGSRW
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB6 RDYGALAIIMAGIAFGFHQLYKKYLLPLILGGREDRKQLERMEAGLSELSGSVAQTVTQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RDYGALAIIMAGIAFGFHQLYKKYLLPLILGGREDRKQLERMEAGLSELSGSVAQTVTQL
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB6 QTTLASVQELLIQQQQKIQELAHELAAAKATTSTNWILESQNINELKSEINSLKGLLLNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QTTLASVQELLIQQQQKIQELAHELAAAKATTSTNWILESQNINELKSEINSLKGLLLNR
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB6 RQFPPSPSAPKIPSWQIPVKSPSPSSPAAVNHHSSSDISPVSNESTSSSPGKEGHSPEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RQFPPSPSAPKIPSWQIPVKSPSPSSPAAVNHHSSSDISPVSNESTSSSPGKEGHSPEGS
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB6 TVTYHLLGPQEEGEGVVDVKGQVRMEVQGEEEKREDKEDEEDEEDDDVSHVDEEDCLGVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TVTYHLLGPQEEGEGVVDVKGQVRMEVQGEEEKREDKEDEEDEEDDDVSHVDEEDCLGVQ
310 320 330 340 350 360
350 360 370
pF1KB6 REDRRGGDGQINEQVEKLRRPEGASNESERD
:::::::::::::::::::::::::::::::
XP_011 REDRRGGDGQINEQVEKLRRPEGASNESERD
370 380 390
>>XP_011539880 (OMIM: 601791,614887) PREDICTED: peroxiso (358 aa)
initn: 2278 init1: 2278 opt: 2278 Z-score: 1641.0 bits: 312.3 E(85289): 1.2e-84
Smith-Waterman score: 2278; 99.7% identity (100.0% similar) in 350 aa overlap (28-377:9-358)
10 20 30 40 50 60
pF1KB6 MASSEQAEQPSQPSSTPGSENVLPREPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTD
.::::::::::::::::::::::::::::::::
XP_011 MLNKLICLMIATAVKFLQNSRVRQSPLATRRAFLKKKGLTD
10 20 30 40
70 80 90 100 110 120
pF1KB6 EEIDMAFQQSGTAADEPSSLGPATQVVPVQPPHLISQPYSPAGSRWRDYGALAIIMAGIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EEIDMAFQQSGTAADEPSSLGPATQVVPVQPPHLISQPYSPAGSRWRDYGALAIIMAGIA
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB6 FGFHQLYKKYLLPLILGGREDRKQLERMEAGLSELSGSVAQTVTQLQTTLASVQELLIQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FGFHQLYKKYLLPLILGGREDRKQLERMEAGLSELSGSVAQTVTQLQTTLASVQELLIQQ
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB6 QQKIQELAHELAAAKATTSTNWILESQNINELKSEINSLKGLLLNRRQFPPSPSAPKIPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QQKIQELAHELAAAKATTSTNWILESQNINELKSEINSLKGLLLNRRQFPPSPSAPKIPS
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB6 WQIPVKSPSPSSPAAVNHHSSSDISPVSNESTSSSPGKEGHSPEGSTVTYHLLGPQEEGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WQIPVKSPSPSSPAAVNHHSSSDISPVSNESTSSSPGKEGHSPEGSTVTYHLLGPQEEGE
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB6 GVVDVKGQVRMEVQGEEEKREDKEDEEDEEDDDVSHVDEEDCLGVQREDRRGGDGQINEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GVVDVKGQVRMEVQGEEEKREDKEDEEDEEDDDVSHVDEEDCLGVQREDRRGGDGQINEQ
290 300 310 320 330 340
370
pF1KB6 VEKLRRPEGASNESERD
:::::::::::::::::
XP_011 VEKLRRPEGASNESERD
350
>>XP_005263527 (OMIM: 601791,614887) PREDICTED: peroxiso (313 aa)
initn: 2055 init1: 2055 opt: 2055 Z-score: 1482.8 bits: 282.8 E(85289): 7.4e-76
Smith-Waterman score: 2055; 100.0% identity (100.0% similar) in 313 aa overlap (65-377:1-313)
40 50 60 70 80 90
pF1KB6 FLQNSRVRQSPLATRRAFLKKKGLTDEEIDMAFQQSGTAADEPSSLGPATQVVPVQPPHL
::::::::::::::::::::::::::::::
XP_005 MAFQQSGTAADEPSSLGPATQVVPVQPPHL
10 20 30
100 110 120 130 140 150
pF1KB6 ISQPYSPAGSRWRDYGALAIIMAGIAFGFHQLYKKYLLPLILGGREDRKQLERMEAGLSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ISQPYSPAGSRWRDYGALAIIMAGIAFGFHQLYKKYLLPLILGGREDRKQLERMEAGLSE
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB6 LSGSVAQTVTQLQTTLASVQELLIQQQQKIQELAHELAAAKATTSTNWILESQNINELKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LSGSVAQTVTQLQTTLASVQELLIQQQQKIQELAHELAAAKATTSTNWILESQNINELKS
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB6 EINSLKGLLLNRRQFPPSPSAPKIPSWQIPVKSPSPSSPAAVNHHSSSDISPVSNESTSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EINSLKGLLLNRRQFPPSPSAPKIPSWQIPVKSPSPSSPAAVNHHSSSDISPVSNESTSS
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB6 SPGKEGHSPEGSTVTYHLLGPQEEGEGVVDVKGQVRMEVQGEEEKREDKEDEEDEEDDDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SPGKEGHSPEGSTVTYHLLGPQEEGEGVVDVKGQVRMEVQGEEEKREDKEDEEDEEDDDV
220 230 240 250 260 270
340 350 360 370
pF1KB6 SHVDEEDCLGVQREDRRGGDGQINEQVEKLRRPEGASNESERD
:::::::::::::::::::::::::::::::::::::::::::
XP_005 SHVDEEDCLGVQREDRRGGDGQINEQVEKLRRPEGASNESERD
280 290 300 310
>>XP_011539882 (OMIM: 601791,614887) PREDICTED: peroxiso (334 aa)
initn: 2159 init1: 1812 opt: 1812 Z-score: 1309.1 bits: 250.8 E(85289): 3.5e-66
Smith-Waterman score: 2077; 88.6% identity (88.6% similar) in 377 aa overlap (1-377:1-334)
10 20 30 40 50 60
pF1KB6 MASSEQAEQPSQPSSTPGSENVLPREPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MASSEQAEQPSQPSSTPGSENVLPREPLIATAVKFLQNSRVRQSPLATRRAFLKKKG---
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 EEIDMAFQQSGTAADEPSSLGPATQVVPVQPPHLISQPYSPAGSRWRDYGALAIIMAGIA
::::::::::::::::::::
XP_011 ----------------------------------------PAGSRWRDYGALAIIMAGIA
60 70
130 140 150 160 170 180
pF1KB6 FGFHQLYKKYLLPLILGGREDRKQLERMEAGLSELSGSVAQTVTQLQTTLASVQELLIQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FGFHQLYKKYLLPLILGGREDRKQLERMEAGLSELSGSVAQTVTQLQTTLASVQELLIQQ
80 90 100 110 120 130
190 200 210 220 230 240
pF1KB6 QQKIQELAHELAAAKATTSTNWILESQNINELKSEINSLKGLLLNRRQFPPSPSAPKIPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QQKIQELAHELAAAKATTSTNWILESQNINELKSEINSLKGLLLNRRQFPPSPSAPKIPS
140 150 160 170 180 190
250 260 270 280 290 300
pF1KB6 WQIPVKSPSPSSPAAVNHHSSSDISPVSNESTSSSPGKEGHSPEGSTVTYHLLGPQEEGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WQIPVKSPSPSSPAAVNHHSSSDISPVSNESTSSSPGKEGHSPEGSTVTYHLLGPQEEGE
200 210 220 230 240 250
310 320 330 340 350 360
pF1KB6 GVVDVKGQVRMEVQGEEEKREDKEDEEDEEDDDVSHVDEEDCLGVQREDRRGGDGQINEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GVVDVKGQVRMEVQGEEEKREDKEDEEDEEDDDVSHVDEEDCLGVQREDRRGGDGQINEQ
260 270 280 290 300 310
370
pF1KB6 VEKLRRPEGASNESERD
:::::::::::::::::
XP_011 VEKLRRPEGASNESERD
320 330
>>XP_011539881 (OMIM: 601791,614887) PREDICTED: peroxiso (348 aa)
initn: 2084 init1: 1812 opt: 1812 Z-score: 1308.8 bits: 250.8 E(85289): 3.6e-66
Smith-Waterman score: 2002; 88.2% identity (88.2% similar) in 365 aa overlap (13-377:27-348)
10 20 30 40
pF1KB6 MASSEQAEQPSQPSSTPGSENVLPREPLIATAVKFLQNSRVRQSPL
::::::::::::::::::::::::::::::::::
XP_011 MDTRRWGSWGHLRVCSPQDSFSFWATPSSTPGSENVLPREPLIATAVKFLQNSRVRQSPL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB6 ATRRAFLKKKGLTDEEIDMAFQQSGTAADEPSSLGPATQVVPVQPPHLISQPYSPAGSRW
::::::::::: ::::::
XP_011 ATRRAFLKKKG-------------------------------------------PAGSRW
70
110 120 130 140 150 160
pF1KB6 RDYGALAIIMAGIAFGFHQLYKKYLLPLILGGREDRKQLERMEAGLSELSGSVAQTVTQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RDYGALAIIMAGIAFGFHQLYKKYLLPLILGGREDRKQLERMEAGLSELSGSVAQTVTQL
80 90 100 110 120 130
170 180 190 200 210 220
pF1KB6 QTTLASVQELLIQQQQKIQELAHELAAAKATTSTNWILESQNINELKSEINSLKGLLLNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QTTLASVQELLIQQQQKIQELAHELAAAKATTSTNWILESQNINELKSEINSLKGLLLNR
140 150 160 170 180 190
230 240 250 260 270 280
pF1KB6 RQFPPSPSAPKIPSWQIPVKSPSPSSPAAVNHHSSSDISPVSNESTSSSPGKEGHSPEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RQFPPSPSAPKIPSWQIPVKSPSPSSPAAVNHHSSSDISPVSNESTSSSPGKEGHSPEGS
200 210 220 230 240 250
290 300 310 320 330 340
pF1KB6 TVTYHLLGPQEEGEGVVDVKGQVRMEVQGEEEKREDKEDEEDEEDDDVSHVDEEDCLGVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TVTYHLLGPQEEGEGVVDVKGQVRMEVQGEEEKREDKEDEEDEEDDDVSHVDEEDCLGVQ
260 270 280 290 300 310
350 360 370
pF1KB6 REDRRGGDGQINEQVEKLRRPEGASNESERD
:::::::::::::::::::::::::::::::
XP_011 REDRRGGDGQINEQVEKLRRPEGASNESERD
320 330 340
377 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 11:30:34 2016 done: Sat Nov 5 11:30:36 2016
Total Scan time: 9.620 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]