FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6583, 377 aa
  1>>>pF1KB6583 377 - 377 aa - 377 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.0842+/-0.000782; mu= 1.0717+/- 0.048
 mean_var=188.3506+/-37.303, 0's: 0 Z-trim(115.4): 7  B-trim: 0 in 0/55
 Lambda= 0.093452
 statistics sampled from 15937 (15941) to 15937 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.791), E-opt: 0.2 (0.49), width:  16
 Scan time:  3.040

The best scores are:                                      opt bits E(32554)
CCDS30582.1 PEX14 gene_id:5195|Hs108|chr1          ( 377) 2459 343.1 2.4e-94


>>CCDS30582.1 PEX14 gene_id:5195|Hs108|chr1               (377 aa)
 initn: 2459 init1: 2459 opt: 2459  Z-score: 1807.3  bits: 343.1 E(32554): 2.4e-94
Smith-Waterman score: 2459; 100.0% identity (100.0% similar) in 377 aa overlap (1-377:1-377)

               10        20        30        40        50        60
pF1KB6 MASSEQAEQPSQPSSTPGSENVLPREPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MASSEQAEQPSQPSSTPGSENVLPREPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EEIDMAFQQSGTAADEPSSLGPATQVVPVQPPHLISQPYSPAGSRWRDYGALAIIMAGIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 EEIDMAFQQSGTAADEPSSLGPATQVVPVQPPHLISQPYSPAGSRWRDYGALAIIMAGIA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 FGFHQLYKKYLLPLILGGREDRKQLERMEAGLSELSGSVAQTVTQLQTTLASVQELLIQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 FGFHQLYKKYLLPLILGGREDRKQLERMEAGLSELSGSVAQTVTQLQTTLASVQELLIQQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 QQKIQELAHELAAAKATTSTNWILESQNINELKSEINSLKGLLLNRRQFPPSPSAPKIPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 QQKIQELAHELAAAKATTSTNWILESQNINELKSEINSLKGLLLNRRQFPPSPSAPKIPS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 WQIPVKSPSPSSPAAVNHHSSSDISPVSNESTSSSPGKEGHSPEGSTVTYHLLGPQEEGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 WQIPVKSPSPSSPAAVNHHSSSDISPVSNESTSSSPGKEGHSPEGSTVTYHLLGPQEEGE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 GVVDVKGQVRMEVQGEEEKREDKEDEEDEEDDDVSHVDEEDCLGVQREDRRGGDGQINEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GVVDVKGQVRMEVQGEEEKREDKEDEEDEEDDDVSHVDEEDCLGVQREDRRGGDGQINEQ
              310       320       330       340       350       360

              370       
pF1KB6 VEKLRRPEGASNESERD
       :::::::::::::::::
CCDS30 VEKLRRPEGASNESERD
              370       




377 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:30:34 2016 done: Sat Nov  5 11:30:34 2016
 Total Scan time:  3.040 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]