Result of FASTA (ccds) for
pF1KB6578
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6578, 402 aa
1>>>pF1KB6578 402 - 402 aa - 402 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9063+/-0.000814; mu= 16.3288+/- 0.049
mean_var=109.2149+/-21.691, 0's: 0 Z-trim(111.5): 102 B-trim: 72 in 1/51
Lambda= 0.122725
statistics sampled from 12287 (12394) to 12287 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.381), width: 16
Scan time: 3.240
The best scores are: opt bits E(32554)
CCDS43868.1 BSPRY gene_id:54836|Hs108|chr9 ( 402) 2720 492.0 4.2e-139
CCDS34378.1 TRIM39 gene_id:56658|Hs108|chr6 ( 488) 363 74.7 2.1e-13
CCDS32437.1 TRIM72 gene_id:493829|Hs108|chr16 ( 477) 337 70.1 4.9e-12
CCDS4677.1 TRIM15 gene_id:89870|Hs108|chr6 ( 465) 324 67.8 2.4e-11
CCDS34654.1 TRIM50 gene_id:135892|Hs108|chr7 ( 487) 318 66.7 5.2e-11
>>CCDS43868.1 BSPRY gene_id:54836|Hs108|chr9 (402 aa)
initn: 2720 init1: 2720 opt: 2720 Z-score: 2610.7 bits: 492.0 E(32554): 4.2e-139
Smith-Waterman score: 2720; 99.8% identity (99.8% similar) in 402 aa overlap (1-402:1-402)
10 20 30 40 50 60
pF1KB6 MSAEGAEPGPGSGSGPGPGPLCPEHGQALSWFCGSERRPVCAACAGLGGRCRGHRIRRAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MSAEGAEPGPGSGSGPGPGPLCPEHGQALSWFCGSERRPVCAACAGLGGRCRGHRIRRAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ERAEELRNKIVDQCERLQLQSAAITKYVADVLPGKNQRAVSMASAARELVIQRLSLVRSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ERAEELRNKIVDQCERLQLQSAAITKYVADVLPGKNQRAVSMASAARELVIQRLSLVRSL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 CESEEQRLLEQVHGEEERAHQSILTQRVHWAEALQKLDTIRTGLVGMLTHLDDLQLIQKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 CESEEQRLLEQVHGEEERAHQSILTQRVHWAEALQKLDTIRTGLVGMLTHLDDLQLIQKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 QEIFERTEEAEGILDPQESEMLNFNEKCTRSPLLTQLWATAVLGSLSGTEDIRIDERTVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QEIFERTEEAEGILDPQESEMLNFNEKCTRSPLLTQLWATAVLGSLSGTEDIRIDERTVS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 PFLQLSDDRKTLTFSTKKSKACADGPERFDHWPNALAATSFQNGLHAWMVNVQNSCAYKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PFLQLSDDRKTLTFSTKKSKACADGPERFDHWPNALAATSFQNGLHAWMVNVQNSCAYKV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 GVASGHLPRKGSGSDCRLGHNAFSWVFSRYDQEFRFSHNGQHEPLGLLRGPAQLGVVLDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GVASGHLPRKGSGSDCRLGHNAFSWVFSRYDQEFRFSHNGQHEPLGLLRGPAQLGVVLDL
310 320 330 340 350 360
370 380 390 400
pF1KB6 QVQELLFYEPASGIVLCAHHVSFPGPLFPVFAVADQTISIVR
::::::::::::: ::::::::::::::::::::::::::::
CCDS43 QVQELLFYEPASGTVLCAHHVSFPGPLFPVFAVADQTISIVR
370 380 390 400
>>CCDS34378.1 TRIM39 gene_id:56658|Hs108|chr6 (488 aa)
initn: 329 init1: 194 opt: 363 Z-score: 354.3 bits: 74.7 E(32554): 2.1e-13
Smith-Waterman score: 378; 25.1% identity (54.1% similar) in 379 aa overlap (21-391:106-465)
10 20 30 40 50
pF1KB6 MSAEGAEPGPGSGSGPGPGPLCPEHGQALSWFCGSERRPVCAACAGLGGR
:::.: .::: :: ... :: :: ..
CCDS34 RSLRPNRQLGSMVEIAKQLQAVKRKIRDESLCPQHHEALSLFCYEDQEAVCLICA-ISHT
80 90 100 110 120 130
60 70 80 90 100
pF1KB6 CRGHRIRRAEERAEELRNKIVDQC-ERLQLQSAAIT--KYVADVLPGKNQRAVSMASAAR
:.: . .. ..: ..:. ..: : :. . :: : . ::. .: : . :
CCDS34 HRAHTVVPLDDATQEYKEKL-QKCLEPLEQKLQEITRCKSSEEKKPGELKRLV---ESRR
140 150 160 170 180 190
110 120 130 140 150 160
pF1KB6 ELVIQRLSLVRSLCESEEQRLLEQVHGEEERAHQSILTQRVHWAEALQKLDTIRTGLVG-
. ..... .. . :.: :: ... ::. : . . .: .. . : . . . :
CCDS34 QQILREFEELHRRLDEEQQVLLSRLEEEEQDILQRLRENAAHLGDKRRDLAHLAAEVEGK
200 210 220 230 240 250
170 180 190 200 210 220
pF1KB6 -MLTHLDDLQLIQKEQEIFER--TEEAEGILDPQESEMLNFNEK-CTRSPLLTQLWATAV
. . .. :. ... : :. : :. .. :... :: .. . .: :: :
CCDS34 CLQSGFEMLKDVKSTLEKCEKVKTMEVTSVSIELEKNFSNFPRQYFALRKILKQLIA---
260 270 280 290 300
230 240 250 260 270 280
pF1KB6 LGSLSGTEDIRIDERTVSPFLQLSDDRKTLTFSTKKSKACADGPERFDHWPNALAATSFQ
:. .: .:. : : ::.:::.. : . . : :.:: .: .::. .:
CCDS34 --------DVTLDPETAHPNLVLSEDRKSVKFVETRLRDLPDTPRRFTFYPCVLATEGFT
310 320 330 340 350
290 300 310 320 330 340
pF1KB6 NGLHAWMVNVQNSCAYKVGVASGHLPRKGSGSDCRLGHNAFSWVFSRYDQEFRFSHNGQH
.: : : :.: .. . ::: . ::: . : .... : .. . . .
CCDS34 SGRHYWEVEVGDKTHWAVGVCRDSVSRKGELTP--LPETGY-WRVRLWNGDKYAATTTPF
360 370 380 390 400 410
350 360 370 380 390 400
pF1KB6 EPLGLLRGPAQLGVVLDLQVQELLFYEPASGIVLCAHHVSFPGPLFPVFAVADQTISIVR
:: . : ..:. :: .. : ::. .. . . .: :.:.:
CCDS34 TPLHIKVKPKRVGIFLDYEAGTLSFYNVTDRSHIYTFTDTFTEKLWPLFYPGIRAGRKNA
420 430 440 450 460 470
CCDS34 APLTIRPPTDWE
480
>>CCDS32437.1 TRIM72 gene_id:493829|Hs108|chr16 (477 aa)
initn: 96 init1: 96 opt: 337 Z-score: 329.5 bits: 70.1 E(32554): 4.9e-12
Smith-Waterman score: 345; 24.9% identity (54.8% similar) in 389 aa overlap (18-393:82-455)
10 20 30 40
pF1KB6 MSAEGAEPGPGSGSGPGPGPLCPEHGQALSWFCGSERRPVCAACAGL
: : :: . :: .: ..: ::..::.:
CCDS32 LCPCCQAPTRPQALSTNLQLARLVEGLAQVPQGHCEEHLDPLSIYCEQDRALVCGVCASL
60 70 80 90 100 110
50 60 70 80 90 100
pF1KB6 GGRCRGHRIRRAEERAEELRNKIVDQCERLQLQSAAITKYVA-DVLPGKNQRAVSMASAA
:.. ::::. : : .:.... .: .:::: : . : . :: . .. .
CCDS32 GSH-RGHRLLPAAEAHARLKTQLPQQ--KLQLQEACMRKEKSVAVLEHQLVEVEETVRQF
120 130 140 150 160
110 120 130 140 150 160
pF1KB6 RELVIQRLSLVRSLCESEE---QRLLEQVHGEEERAHQSILTQRVHWAEALQKLDTIRTG
: : ..:. .: . . : .: :.:.:: : . : . . : :.... .
CCDS32 RGAVGEQLGKMRVFLAALEGSLDREAERVRGEAGVALRRELGSLNSYLEQLRQMEKV---
170 180 190 200 210 220
170 180 190 200 210 220
pF1KB6 LVGMLTHLDDLQLIQKEQEIFERTEEAEGILDPQESEMLNFNEKCTRSPLLTQLWATAVL
. .. . ....: . : .. . : :... . . :.:
CCDS32 -LEEVADKPQTEFLMKYCLVTSRLQKILAESPPPAR--LDIQLPIISDDFKFQVWRKMFR
230 240 250 260 270 280
230 240 250 260 270 280
pF1KB6 GSLSGTEDIRIDERTVSPFLQLSDDRKTLTFSTKKSKACADGPERFDHWPNALAATSFQN
. . . :.. .: .. : : .:.. . . : .:. .. :..::. ..: ....
CCDS32 ALMPALEELTFDPSSAHPSLVVSSSGRRVECSEQKAPPAGEDPRQFDKAVAVVAHQQLSE
290 300 310 320 330 340
290 300 310 320 330 340
pF1KB6 GLHAWMVNVQNSCAYKVGVASGHLPRKGSGSDCRLGHNAFS---WVFSRYDQEFRFSHNG
: : : :.: .. . .:: ... ::.: :: : . : :... . .. .:
CCDS32 GEHYWEVDVGDKPRWALGVIAAEAPRRG-----RL-HAVPSQGLWLLGLREGKILEAHVE
350 360 370 380 390
350 360 370 380 390
pF1KB6 QHEPLGLL---RGPAQLGVVLDLQVQELLFYEP--ASGIV-LCAHHVSFPGPLFPVFAVA
.:: .: : :...:. :.. : ::. :...: : : : .: :..: : :
CCDS32 AKEPRALRSPERRPTRIGLYLSFGDGVLSFYDASDADALVPLFAFHERLPRPVYPFFDVC
400 410 420 430 440 450
400
pF1KB6 DQTISIVR
CCDS32 WHDKGKNAQPLLLVGPEGAEA
460 470
>>CCDS4677.1 TRIM15 gene_id:89870|Hs108|chr6 (465 aa)
initn: 162 init1: 66 opt: 324 Z-score: 317.2 bits: 67.8 E(32554): 2.4e-11
Smith-Waterman score: 324; 24.9% identity (55.4% similar) in 397 aa overlap (16-393:72-454)
10 20 30 40
pF1KB6 MSAEGAEPGPGSGSGPGP-GPL----CPEHGQALSWFCGSERRPV
: : ::: : :::. . .:: .. . .
CCDS46 ALSQMGAQSSGKILLCPLCQEEEQAETPMAPVPLGPLGETYCEEHGEKIYFFCENDAEFL
50 60 70 80 90 100
50 60 70 80 90
pF1KB6 CAACAGLGGRCRGHRIRRAEERAEELRNKIVDQCERLQLQSAAI--TKYVAD----VLPG
:. : : ..: . .: . :... .. : :. . : .: : ::
CCDS46 CVFCRE-GPTHQAHTVGFLDEAIQPYRDRLRSRLEALSTERDEIEDVKCQEDQKLQVLLT
110 120 130 140 150 160
100 110 120 130 140 150
pF1KB6 KNQRAVSMASAARELVIQRLSLVRSLCESEEQRLLEQVHGEEERAHQSILTQRVHWAEAL
. . .. .: : . :.: : : .. ..: .:. :... .. . .. . .
CCDS46 QIESKKHQVETAFERLQQELEQQRCLLLARLRELEQQIWKERDEYITKVSEEVTRLGAQV
170 180 190 200 210 220
160 170 180 190 200 210
pF1KB6 QKLDTIRTGLVGMLTHLDDLQLIQKEQEIFERTEEAEGILDPQESEMLNFNEKCTRSPLL
..:. .. : :.:... :.. :. . :.: ... .:..: : .
CCDS46 KELEEKCQQPASEL--LQDVRVNQSRCEM-KTFVSPEAISPDLVKKIRDFHRKILTLPEM
230 240 250 260 270
220 230 240 250 260 270
pF1KB6 TQLWATAVLGSL---SGTEDIRIDERTVSPFLQLSDDRKTLTFSTKKSKACADGPERFDH
.... . : ::. : .: .:.: : ::.:::.. . :...:. :.: :::
CCDS46 MRMFSENLAHHLEIDSGV--ITLDPQTASRSLVLSEDRKSVRY-TRQKKSLPDSPLRFDG
280 290 300 310 320 330
280 290 300 310 320
pF1KB6 WPNALAATSFQNGLHAWMVNVQ--NSCAYKVGVASGHLPRKGSGSDCRLGHNAFS--W-V
: .:. .:..: : :.:..: .. . ::::. . ::: ..: .: . : :
CCDS46 LPAVLGFPGFSSGRHRWQVDLQLGDGGGCTVGVAGEGVRRKG-----EMGLSAEDGVWAV
340 350 360 370 380
330 340 350 360 370 380
pF1KB6 FSRYDQEFRFSHNGQHEPLGLLRGPAQLGVVLDLQVQELLFYEPASGIVLCAHHVSFPGP
. ..: . . : ::. . : . :.:: .. .. ... . . . .:: :
CCDS46 IISHQQCWASTSPGTDLPLSEI--PRGVRVALDYEAGQVTLHNAQTQEPIFTFTASFSGK
390 400 410 420 430 440
390 400
pF1KB6 LFPVFAVADQTISIVR
.:: :::
CCDS46 VFPFFAVWKKGSCLTLKG
450 460
>>CCDS34654.1 TRIM50 gene_id:135892|Hs108|chr7 (487 aa)
initn: 215 init1: 124 opt: 318 Z-score: 311.2 bits: 66.7 E(32554): 5.2e-11
Smith-Waterman score: 318; 21.4% identity (55.6% similar) in 383 aa overlap (16-391:81-454)
10 20 30 40
pF1KB6 MSAEGAEPGPGSGSGPG-PGP-LCPEHGQALSWFCGSERRPVCAA
:: : : .: .: . :: :: .... .:.
CCDS34 LRCPVCRQAVDGSSSLPNVSLARVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGL
60 70 80 90 100 110
50 60 70 80 90 100
pF1KB6 CAGLGGRCRGHRIRRAEERAEELRNKIVDQCERLQLQSAAITKYVADVLPGKNQRAVSMA
: :: : . : . . ....... .:. .. . . .: .. ... : :. .
CCDS34 C-GLLGSHQHHPVTPVSTVYSRMKEELAALISELKQEQKKVDELIAKLVNNRT-RIVNES
120 130 140 150 160
110 120 130 140 150 160
pF1KB6 SAARELVIQRLSLVRSLCESEEQRLLEQVHGEEERAHQSILTQRVHWAEALQKLDTIRTG
.. .. .... .. : . :. : :: . :. :. . : .... :.. .. .
CCDS34 DVFSWVIRREFQELHHLVDEEKARCLEGIGGHT-RGLVASLDMQLEQAQGTRERLAQAEC
170 180 190 200 210 220
170 180 190 200 210 220
pF1KB6 LVGMLTHLDDLQLIQKEQEIFERTEEAEGILDPQESEM--LNFNEKCTRSPLLTQLWATA
.. .. . : ..:.: . . :.: .. : :. . ..:. .. . .:
CCDS34 VLEQFGNEDHHKFIRKFHSMASRAEMPQA--RPLEGAFSPISFKPGLHQADIKLTVWKRL
230 240 250 260 270 280
230 240 250 260 270 280
pF1KB6 VLGSLSGTEDIRIDERTVSPFLQLSDDRKTLTFSTKKSKACADGPERFDHWPNALAATSF
: . : ...: :. :.:.:: .. . .. :. :::::. .::. .:
CCDS34 FRKVLPAPEPLKLDPATAHPLLELSKGNTVVQCGLLAQRR-ASQPERFDYSTCVLASRGF
290 300 310 320 330 340
290 300 310 320 330 340
pF1KB6 QNGLHAWMVNVQNSCAYKVGVASGHLPRKGSGSDCRLGHNAFSWVFSRYDQEFRFSHNGQ
. : : : : : .. ...:: .: :::. . : ... :... . . .
CCDS34 SCGRHYWEVVVGSKSDWRLGVIKGTASRKGKLN--RSPEHGV-WLIGLKEGRVYEAFACP
350 360 370 380 390 400
350 360 370 380 390
pF1KB6 HEPLGLLRGPAQLGVVLDLQVQELLFYE---PASGIVLCAHHVSFPGPLFPVFAVADQTI
. :: . : ..:. : . :: :.. : . : . ...: : :.:..
CCDS34 RVPLPVAGHPHRIGLYLHYEQGELTFFDADRPDDLRPLYTFQADFQGKLYPILDTCWHER
410 420 430 440 450 460
400
pF1KB6 SIVR
CCDS34 GSNSLPMVLPPPSGPGPLSPEQPTKL
470 480
402 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 11:29:56 2016 done: Sat Nov 5 11:29:56 2016
Total Scan time: 3.240 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]