FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6577, 377 aa
  1>>>pF1KB6577 377 - 377 aa - 377 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.6171+/-0.00118; mu= -0.4419+/- 0.070
 mean_var=218.0340+/-47.755, 0's: 0 Z-trim(107.7): 153  B-trim: 0 in 0/52
 Lambda= 0.086858
 statistics sampled from 9581 (9747) to 9581 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.299), width:  16
 Scan time:  2.600

The best scores are:                                      opt bits E(32554)
CCDS3092.1 NCK1 gene_id:4690|Hs108|chr3            ( 377) 2556 333.6 1.7e-91
CCDS54644.1 NCK1 gene_id:4690|Hs108|chr3           ( 313) 2075 273.3 2.1e-73
CCDS33266.1 NCK2 gene_id:8440|Hs108|chr2           ( 380) 1794 238.1 9.5e-63


>>CCDS3092.1 NCK1 gene_id:4690|Hs108|chr3                 (377 aa)
 initn: 2556 init1: 2556 opt: 2556  Z-score: 1756.1  bits: 333.6 E(32554): 1.7e-91
Smith-Waterman score: 2556; 100.0% identity (100.0% similar) in 377 aa overlap (1-377:1-377)

               10        20        30        40        50        60
pF1KB6 MAEEVVVVAKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNSMNKTGFVPSNYVERKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MAEEVVVVAKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNSMNKTGFVPSNYVERKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SARKASIVKNLKDTLGIGKVKRKPSVPDSASPADDSFVDPGERLYDLNMPAYVKFNYMAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SARKASIVKNLKDTLGIGKVKRKPSVPDSASPADDSFVDPGERLYDLNMPAYVKFNYMAE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 REDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEEGDSPLGDHVGSLSEKLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 REDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEEGDSPLGDHVGSLSEKLA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 AVVNNLNTGQVLHVVQALYPFSSSNDEELNFEKGDVMDVIEKPENDPEWWKCRKINGMVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 AVVNNLNTGQVLHVVQALYPFSSSNDEELNFEKGDVMDVIEKPENDPEWWKCRKINGMVG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 LVPKNYVTVMQNNPLTSGLEPSPPQCDYIRPSLTGKFAGNPWYYGKVTRHQAEMALNERG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LVPKNYVTVMQNNPLTSGLEPSPPQCDYIRPSLTGKFAGNPWYYGKVTRHQAEMALNERG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 HEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETVYCIGQRKFSTMEELVEHYKKAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 HEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETVYCIGQRKFSTMEELVEHYKKAP
              310       320       330       340       350       360

              370       
pF1KB6 IFTSEQGEKLYLVKHLS
       :::::::::::::::::
CCDS30 IFTSEQGEKLYLVKHLS
              370       

>>CCDS54644.1 NCK1 gene_id:4690|Hs108|chr3                (313 aa)
 initn: 2075 init1: 2075 opt: 2075  Z-score: 1431.4  bits: 273.3 E(32554): 2.1e-73
Smith-Waterman score: 2075; 98.7% identity (99.7% similar) in 307 aa overlap (71-377:7-313)

               50        60        70        80        90       100
pF1KB6 VRNSMNKTGFVPSNYVERKNSARKASIVKNLKDTLGIGKVKRKPSVPDSASPADDSFVDP
                                     .:: ..::::::::::::::::::::::::
CCDS54                         MDWLNVFKDFFSIGKVKRKPSVPDSASPADDSFVDP
                                       10        20        30      

              110       120       130       140       150       160
pF1KB6 GERLYDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GERLYDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV
         40        50        60        70        80        90      

              170       180       190       200       210       220
pF1KB6 TEEGDSPLGDHVGSLSEKLAAVVNNLNTGQVLHVVQALYPFSSSNDEELNFEKGDVMDVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TEEGDSPLGDHVGSLSEKLAAVVNNLNTGQVLHVVQALYPFSSSNDEELNFEKGDVMDVI
        100       110       120       130       140       150      

              230       240       250       260       270       280
pF1KB6 EKPENDPEWWKCRKINGMVGLVPKNYVTVMQNNPLTSGLEPSPPQCDYIRPSLTGKFAGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EKPENDPEWWKCRKINGMVGLVPKNYVTVMQNNPLTSGLEPSPPQCDYIRPSLTGKFAGN
        160       170       180       190       200       210      

              290       300       310       320       330       340
pF1KB6 PWYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETVYC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PWYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETVYC
        220       230       240       250       260       270      

              350       360       370       
pF1KB6 IGQRKFSTMEELVEHYKKAPIFTSEQGEKLYLVKHLS
       :::::::::::::::::::::::::::::::::::::
CCDS54 IGQRKFSTMEELVEHYKKAPIFTSEQGEKLYLVKHLS
        280       290       300       310   

>>CCDS33266.1 NCK2 gene_id:8440|Hs108|chr2                (380 aa)
 initn: 1814 init1: 731 opt: 1794  Z-score: 1240.0  bits: 238.1 E(32554): 9.5e-63
Smith-Waterman score: 1794; 69.4% identity (87.4% similar) in 382 aa overlap (1-376:1-379)

               10        20        30        40        50        60
pF1KB6 MAEEVVVVAKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNSMNKTGFVPSNYVERKN
       :.:::.:.::.::.:::.::::::::::::::::::.::::::. :.::.::::::::::
CCDS33 MTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVERKN
               10        20        30        40        50        60

               70        80         90        100          110     
pF1KB6 SARKASIVKNLKDTLGIGKVKRKPSVPD-SASPADDS-FVDPG---ERLYDLNMPAYVKF
       : .:.:.:::::::::.::..:: :. : : .:. :. .   :   .:.::::.::.:::
CCDS33 SLKKGSLVKNLKDTLGLGKTRRKTSARDASPTPSTDAEYPANGSGADRIYDLNIPAFVKF
               70        80        90       100       110       120

         120       130       140       150       160       170     
pF1KB6 NYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEEGDSPLGDHVGSL
        :.:::::::::.::..: :::::::::::::::::.:::::::: :: :   ..  . :
CCDS33 AYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYVLEEVDEAAAESPSFL
              130       140       150       160       170       180

         180       190       200       210       220       230     
pF1KB6 SEKLAAVVNNLNTGQVLHVVQALYPFSSSNDEELNFEKGDVMDVIEKPENDPEWWKCRKI
       : . .: ..: . ..::::::.:::::: ..::::::::..:.::::::::::::::.. 
CCDS33 SLRKGASLSNGQGSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNA
              190       200       210       220       230       240

         240       250       260        270       280       290    
pF1KB6 NGMVGLVPKNYVTVMQNNPLTSGLEPS-PPQCDYIRPSLTGKFAGNPWYYGKVTRHQAEM
        :.:::::::::.:....:   .:.:.  :: .:  :: .:.:::  ::::.::::::: 
CCDS33 RGQVGLVPKNYVVVLSDGP---ALHPAHAPQISYTGPSSSGRFAGREWYYGNVTRHQAEC
              250          260       270       280       290       

          300       310       320       330       340       350    
pF1KB6 ALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETVYCIGQRKFSTMEELVE
       :::::: :::::::::::::.::::::::.:::::::::: ..:::::::.: ::.::::
CCDS33 ALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYCIGQRRFHTMDELVE
       300       310       320       330       340       350       

          360       370       
pF1KB6 HYKKAPIFTSEQGEKLYLVKHLS
       :::::::::::.:::::::. : 
CCDS33 HYKKAPIFTSEHGEKLYLVRALQ
       360       370       380




377 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 01:18:39 2016 done: Sat Nov  5 01:18:39 2016
 Total Scan time:  2.600 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]