Result of FASTA (omim) for
pF1KB6557
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6557, 372 aa
1>>>pF1KB6557 372 - 372 aa - 372 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3207+/-0.000302; mu= 12.4233+/- 0.019
mean_var=104.8427+/-21.718, 0's: 0 Z-trim(119.3): 113 B-trim: 628 in 1/60
Lambda= 0.125258
statistics sampled from 33111 (33256) to 33111 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.39), width: 16
Scan time: 9.290
The best scores are: opt bits E(85289)
XP_016869752 (OMIM: 118946) PREDICTED: ciliary neu ( 372) 2570 474.7 1.5e-133
NP_001833 (OMIM: 118946) ciliary neurotrophic fact ( 372) 2570 474.7 1.5e-133
XP_016869754 (OMIM: 118946) PREDICTED: ciliary neu ( 372) 2570 474.7 1.5e-133
XP_016869753 (OMIM: 118946) PREDICTED: ciliary neu ( 372) 2570 474.7 1.5e-133
NP_671693 (OMIM: 118946) ciliary neurotrophic fact ( 372) 2570 474.7 1.5e-133
NP_001193940 (OMIM: 118946) ciliary neurotrophic f ( 372) 2570 474.7 1.5e-133
XP_016869751 (OMIM: 118946) PREDICTED: ciliary neu ( 439) 2570 474.7 1.7e-133
XP_016869749 (OMIM: 118946) PREDICTED: ciliary neu ( 439) 2570 474.7 1.7e-133
XP_016869750 (OMIM: 118946) PREDICTED: ciliary neu ( 439) 2570 474.7 1.7e-133
NP_001193795 (OMIM: 147880,614689,614752) interleu ( 352) 386 80.0 9.2e-15
NP_000556 (OMIM: 147880,614689,614752) interleukin ( 468) 372 77.6 6.7e-14
NP_001136256 (OMIM: 600939,614188) interleukin-11 ( 422) 370 77.2 7.9e-14
NP_852004 (OMIM: 147880,614689,614752) interleukin ( 365) 369 76.9 8e-14
NP_005746 (OMIM: 605816) interleukin-27 subunit be ( 229) 366 76.3 8e-14
XP_011525921 (OMIM: 605816) PREDICTED: interleukin ( 229) 366 76.3 8e-14
XP_016856689 (OMIM: 147880,614689,614752) PREDICTE ( 501) 368 76.9 1.2e-13
XP_006711362 (OMIM: 147880,614689,614752) PREDICTE ( 381) 363 75.9 1.8e-13
XP_006711361 (OMIM: 147880,614689,614752) PREDICTE ( 484) 363 75.9 2.1e-13
XP_016856688 (OMIM: 147880,614689,614752) PREDICTE ( 517) 363 76.0 2.2e-13
XP_011526726 (OMIM: 272430,604237) PREDICTED: cyto ( 404) 268 58.7 2.7e-08
XP_011526725 (OMIM: 272430,604237) PREDICTED: cyto ( 419) 268 58.7 2.8e-08
NP_004741 (OMIM: 272430,604237) cytokine receptor- ( 422) 268 58.7 2.8e-08
XP_011526724 (OMIM: 272430,604237) PREDICTED: cyto ( 423) 268 58.7 2.8e-08
XP_005245197 (OMIM: 147880,614689,614752) PREDICTE ( 338) 266 58.3 3e-08
XP_005245196 (OMIM: 147880,614689,614752) PREDICTE ( 360) 266 58.3 3.2e-08
XP_016856690 (OMIM: 147880,614689,614752) PREDICTE ( 371) 266 58.3 3.2e-08
NP_001191247 (OMIM: 176761,615554,615555) prolacti ( 268) 253 55.9 1.3e-07
NP_001191246 (OMIM: 176761,615554,615555) prolacti ( 288) 251 55.5 1.7e-07
XP_016865135 (OMIM: 176761,615554,615555) PREDICTE ( 309) 251 55.6 1.8e-07
NP_001191244 (OMIM: 176761,615554,615555) prolacti ( 349) 251 55.6 2e-07
NP_001191245 (OMIM: 176761,615554,615555) prolacti ( 376) 251 55.6 2.1e-07
NP_001177910 (OMIM: 600694) interleukin-6 receptor ( 857) 254 56.4 2.8e-07
NP_002175 (OMIM: 600694) interleukin-6 receptor su ( 918) 254 56.4 3e-07
NP_000940 (OMIM: 176761,615554,615555) prolactin r ( 622) 251 55.8 3.2e-07
XP_011512370 (OMIM: 176761,615554,615555) PREDICTE ( 622) 251 55.8 3.2e-07
XP_006714547 (OMIM: 176761,615554,615555) PREDICTE ( 622) 251 55.8 3.2e-07
XP_011512371 (OMIM: 176761,615554,615555) PREDICTE ( 622) 251 55.8 3.2e-07
NP_786943 (OMIM: 600694) interleukin-6 receptor su ( 329) 244 54.3 4.6e-07
XP_016856693 (OMIM: 601642) PREDICTED: interleukin ( 498) 210 48.3 4.6e-05
NP_001245145 (OMIM: 601642) interleukin-12 recepto ( 635) 210 48.4 5.5e-05
XP_016856692 (OMIM: 601642) PREDICTED: interleukin ( 659) 210 48.4 5.7e-05
NP_001306162 (OMIM: 601642) interleukin-12 recepto ( 659) 210 48.4 5.7e-05
NP_001245143 (OMIM: 601642) interleukin-12 recepto ( 659) 210 48.4 5.7e-05
XP_016856691 (OMIM: 601642) PREDICTED: interleukin ( 700) 210 48.4 6e-05
NP_001245144 (OMIM: 601642) interleukin-12 recepto ( 776) 210 48.4 6.5e-05
XP_006710680 (OMIM: 601642) PREDICTED: interleukin ( 776) 210 48.4 6.5e-05
XP_011539686 (OMIM: 601642) PREDICTED: interleukin ( 809) 210 48.4 6.7e-05
XP_005270882 (OMIM: 601642) PREDICTED: interleukin ( 862) 210 48.5 7e-05
XP_005270885 (OMIM: 601642) PREDICTED: interleukin ( 862) 210 48.5 7e-05
NP_001550 (OMIM: 601642) interleukin-12 receptor s ( 862) 210 48.5 7e-05
>>XP_016869752 (OMIM: 118946) PREDICTED: ciliary neurotr (372 aa)
initn: 2570 init1: 2570 opt: 2570 Z-score: 2518.6 bits: 474.7 E(85289): 1.5e-133
Smith-Waterman score: 2570; 100.0% identity (100.0% similar) in 372 aa overlap (1-372:1-372)
10 20 30 40 50 60
pF1KB6 MAAPVPWACCAVLAAAAAVVYAQRHSPQEAPHVQYERLGSDVTLPCGTANWDAAVTWRVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAAPVPWACCAVLAAAAAVVYAQRHSPQEAPHVQYERLGSDVTLPCGTANWDAAVTWRVN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GTDLAPDLLNGSQLVLHGLELGHSGLYACFHRDSWHLRHQVLLHVGLPPREPVLSCRSNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GTDLAPDLLNGSQLVLHGLELGHSGLYACFHRDSWHLRHQVLLHVGLPPREPVLSCRSNT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 YPKGFYCSWHLPTPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YPKGFYCSWHLPTPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 ISVSNALGHNATAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ISVSNALGHNATAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 KFFLRYRPLILDQWQHVELSDGTAHTITDAYAGKEYIIQVAAKDNEIGTWSDWSVAAHAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KFFLRYRPLILDQWQHVELSDGTAHTITDAYAGKEYIIQVAAKDNEIGTWSDWSVAAHAT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 PWTEEPRHLTTEAQAAETTTSTTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PWTEEPRHLTTEAQAAETTTSTTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLAL
310 320 330 340 350 360
370
pF1KB6 AAAAATASSLLI
::::::::::::
XP_016 AAAAATASSLLI
370
>>NP_001833 (OMIM: 118946) ciliary neurotrophic factor r (372 aa)
initn: 2570 init1: 2570 opt: 2570 Z-score: 2518.6 bits: 474.7 E(85289): 1.5e-133
Smith-Waterman score: 2570; 100.0% identity (100.0% similar) in 372 aa overlap (1-372:1-372)
10 20 30 40 50 60
pF1KB6 MAAPVPWACCAVLAAAAAVVYAQRHSPQEAPHVQYERLGSDVTLPCGTANWDAAVTWRVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAPVPWACCAVLAAAAAVVYAQRHSPQEAPHVQYERLGSDVTLPCGTANWDAAVTWRVN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GTDLAPDLLNGSQLVLHGLELGHSGLYACFHRDSWHLRHQVLLHVGLPPREPVLSCRSNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTDLAPDLLNGSQLVLHGLELGHSGLYACFHRDSWHLRHQVLLHVGLPPREPVLSCRSNT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 YPKGFYCSWHLPTPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YPKGFYCSWHLPTPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 ISVSNALGHNATAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISVSNALGHNATAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 KFFLRYRPLILDQWQHVELSDGTAHTITDAYAGKEYIIQVAAKDNEIGTWSDWSVAAHAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KFFLRYRPLILDQWQHVELSDGTAHTITDAYAGKEYIIQVAAKDNEIGTWSDWSVAAHAT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 PWTEEPRHLTTEAQAAETTTSTTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PWTEEPRHLTTEAQAAETTTSTTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLAL
310 320 330 340 350 360
370
pF1KB6 AAAAATASSLLI
::::::::::::
NP_001 AAAAATASSLLI
370
>>XP_016869754 (OMIM: 118946) PREDICTED: ciliary neurotr (372 aa)
initn: 2570 init1: 2570 opt: 2570 Z-score: 2518.6 bits: 474.7 E(85289): 1.5e-133
Smith-Waterman score: 2570; 100.0% identity (100.0% similar) in 372 aa overlap (1-372:1-372)
10 20 30 40 50 60
pF1KB6 MAAPVPWACCAVLAAAAAVVYAQRHSPQEAPHVQYERLGSDVTLPCGTANWDAAVTWRVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAAPVPWACCAVLAAAAAVVYAQRHSPQEAPHVQYERLGSDVTLPCGTANWDAAVTWRVN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GTDLAPDLLNGSQLVLHGLELGHSGLYACFHRDSWHLRHQVLLHVGLPPREPVLSCRSNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GTDLAPDLLNGSQLVLHGLELGHSGLYACFHRDSWHLRHQVLLHVGLPPREPVLSCRSNT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 YPKGFYCSWHLPTPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YPKGFYCSWHLPTPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 ISVSNALGHNATAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ISVSNALGHNATAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 KFFLRYRPLILDQWQHVELSDGTAHTITDAYAGKEYIIQVAAKDNEIGTWSDWSVAAHAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KFFLRYRPLILDQWQHVELSDGTAHTITDAYAGKEYIIQVAAKDNEIGTWSDWSVAAHAT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 PWTEEPRHLTTEAQAAETTTSTTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PWTEEPRHLTTEAQAAETTTSTTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLAL
310 320 330 340 350 360
370
pF1KB6 AAAAATASSLLI
::::::::::::
XP_016 AAAAATASSLLI
370
>>XP_016869753 (OMIM: 118946) PREDICTED: ciliary neurotr (372 aa)
initn: 2570 init1: 2570 opt: 2570 Z-score: 2518.6 bits: 474.7 E(85289): 1.5e-133
Smith-Waterman score: 2570; 100.0% identity (100.0% similar) in 372 aa overlap (1-372:1-372)
10 20 30 40 50 60
pF1KB6 MAAPVPWACCAVLAAAAAVVYAQRHSPQEAPHVQYERLGSDVTLPCGTANWDAAVTWRVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAAPVPWACCAVLAAAAAVVYAQRHSPQEAPHVQYERLGSDVTLPCGTANWDAAVTWRVN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GTDLAPDLLNGSQLVLHGLELGHSGLYACFHRDSWHLRHQVLLHVGLPPREPVLSCRSNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GTDLAPDLLNGSQLVLHGLELGHSGLYACFHRDSWHLRHQVLLHVGLPPREPVLSCRSNT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 YPKGFYCSWHLPTPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YPKGFYCSWHLPTPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 ISVSNALGHNATAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ISVSNALGHNATAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 KFFLRYRPLILDQWQHVELSDGTAHTITDAYAGKEYIIQVAAKDNEIGTWSDWSVAAHAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KFFLRYRPLILDQWQHVELSDGTAHTITDAYAGKEYIIQVAAKDNEIGTWSDWSVAAHAT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 PWTEEPRHLTTEAQAAETTTSTTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PWTEEPRHLTTEAQAAETTTSTTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLAL
310 320 330 340 350 360
370
pF1KB6 AAAAATASSLLI
::::::::::::
XP_016 AAAAATASSLLI
370
>>NP_671693 (OMIM: 118946) ciliary neurotrophic factor r (372 aa)
initn: 2570 init1: 2570 opt: 2570 Z-score: 2518.6 bits: 474.7 E(85289): 1.5e-133
Smith-Waterman score: 2570; 100.0% identity (100.0% similar) in 372 aa overlap (1-372:1-372)
10 20 30 40 50 60
pF1KB6 MAAPVPWACCAVLAAAAAVVYAQRHSPQEAPHVQYERLGSDVTLPCGTANWDAAVTWRVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_671 MAAPVPWACCAVLAAAAAVVYAQRHSPQEAPHVQYERLGSDVTLPCGTANWDAAVTWRVN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GTDLAPDLLNGSQLVLHGLELGHSGLYACFHRDSWHLRHQVLLHVGLPPREPVLSCRSNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_671 GTDLAPDLLNGSQLVLHGLELGHSGLYACFHRDSWHLRHQVLLHVGLPPREPVLSCRSNT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 YPKGFYCSWHLPTPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_671 YPKGFYCSWHLPTPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 ISVSNALGHNATAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_671 ISVSNALGHNATAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 KFFLRYRPLILDQWQHVELSDGTAHTITDAYAGKEYIIQVAAKDNEIGTWSDWSVAAHAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_671 KFFLRYRPLILDQWQHVELSDGTAHTITDAYAGKEYIIQVAAKDNEIGTWSDWSVAAHAT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 PWTEEPRHLTTEAQAAETTTSTTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_671 PWTEEPRHLTTEAQAAETTTSTTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLAL
310 320 330 340 350 360
370
pF1KB6 AAAAATASSLLI
::::::::::::
NP_671 AAAAATASSLLI
370
>>NP_001193940 (OMIM: 118946) ciliary neurotrophic facto (372 aa)
initn: 2570 init1: 2570 opt: 2570 Z-score: 2518.6 bits: 474.7 E(85289): 1.5e-133
Smith-Waterman score: 2570; 100.0% identity (100.0% similar) in 372 aa overlap (1-372:1-372)
10 20 30 40 50 60
pF1KB6 MAAPVPWACCAVLAAAAAVVYAQRHSPQEAPHVQYERLGSDVTLPCGTANWDAAVTWRVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAPVPWACCAVLAAAAAVVYAQRHSPQEAPHVQYERLGSDVTLPCGTANWDAAVTWRVN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GTDLAPDLLNGSQLVLHGLELGHSGLYACFHRDSWHLRHQVLLHVGLPPREPVLSCRSNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTDLAPDLLNGSQLVLHGLELGHSGLYACFHRDSWHLRHQVLLHVGLPPREPVLSCRSNT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 YPKGFYCSWHLPTPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YPKGFYCSWHLPTPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 ISVSNALGHNATAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISVSNALGHNATAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 KFFLRYRPLILDQWQHVELSDGTAHTITDAYAGKEYIIQVAAKDNEIGTWSDWSVAAHAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KFFLRYRPLILDQWQHVELSDGTAHTITDAYAGKEYIIQVAAKDNEIGTWSDWSVAAHAT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 PWTEEPRHLTTEAQAAETTTSTTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PWTEEPRHLTTEAQAAETTTSTTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLAL
310 320 330 340 350 360
370
pF1KB6 AAAAATASSLLI
::::::::::::
NP_001 AAAAATASSLLI
370
>>XP_016869751 (OMIM: 118946) PREDICTED: ciliary neurotr (439 aa)
initn: 2570 init1: 2570 opt: 2570 Z-score: 2517.6 bits: 474.7 E(85289): 1.7e-133
Smith-Waterman score: 2570; 100.0% identity (100.0% similar) in 372 aa overlap (1-372:68-439)
10 20 30
pF1KB6 MAAPVPWACCAVLAAAAAVVYAQRHSPQEA
::::::::::::::::::::::::::::::
XP_016 LTGQRLRVYSSSDGGGAAGSKDTLGLSSSVMAAPVPWACCAVLAAAAAVVYAQRHSPQEA
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB6 PHVQYERLGSDVTLPCGTANWDAAVTWRVNGTDLAPDLLNGSQLVLHGLELGHSGLYACF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PHVQYERLGSDVTLPCGTANWDAAVTWRVNGTDLAPDLLNGSQLVLHGLELGHSGLYACF
100 110 120 130 140 150
100 110 120 130 140 150
pF1KB6 HRDSWHLRHQVLLHVGLPPREPVLSCRSNTYPKGFYCSWHLPTPTYIPNTFNVTVLHGSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HRDSWHLRHQVLLHVGLPPREPVLSCRSNTYPKGFYCSWHLPTPTYIPNTFNVTVLHGSK
160 170 180 190 200 210
160 170 180 190 200 210
pF1KB6 IMVCEKDPALKNRCHIRYMHLFSTIKYKVSISVSNALGHNATAITFDEFTIVKPDPPENV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IMVCEKDPALKNRCHIRYMHLFSTIKYKVSISVSNALGHNATAITFDEFTIVKPDPPENV
220 230 240 250 260 270
220 230 240 250 260 270
pF1KB6 VARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSDGTAHTITDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSDGTAHTITDA
280 290 300 310 320 330
280 290 300 310 320 330
pF1KB6 YAGKEYIIQVAAKDNEIGTWSDWSVAAHATPWTEEPRHLTTEAQAAETTTSTTSSLAPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YAGKEYIIQVAAKDNEIGTWSDWSVAAHATPWTEEPRHLTTEAQAAETTTSTTSSLAPPP
340 350 360 370 380 390
340 350 360 370
pF1KB6 TTKICDPGELGSGGGPSAPFLVSVPITLALAAAAATASSLLI
::::::::::::::::::::::::::::::::::::::::::
XP_016 TTKICDPGELGSGGGPSAPFLVSVPITLALAAAAATASSLLI
400 410 420 430
>>XP_016869749 (OMIM: 118946) PREDICTED: ciliary neurotr (439 aa)
initn: 2570 init1: 2570 opt: 2570 Z-score: 2517.6 bits: 474.7 E(85289): 1.7e-133
Smith-Waterman score: 2570; 100.0% identity (100.0% similar) in 372 aa overlap (1-372:68-439)
10 20 30
pF1KB6 MAAPVPWACCAVLAAAAAVVYAQRHSPQEA
::::::::::::::::::::::::::::::
XP_016 LTGQRLRVYSSSDGGGAAGSKDTLGLSSSVMAAPVPWACCAVLAAAAAVVYAQRHSPQEA
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB6 PHVQYERLGSDVTLPCGTANWDAAVTWRVNGTDLAPDLLNGSQLVLHGLELGHSGLYACF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PHVQYERLGSDVTLPCGTANWDAAVTWRVNGTDLAPDLLNGSQLVLHGLELGHSGLYACF
100 110 120 130 140 150
100 110 120 130 140 150
pF1KB6 HRDSWHLRHQVLLHVGLPPREPVLSCRSNTYPKGFYCSWHLPTPTYIPNTFNVTVLHGSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HRDSWHLRHQVLLHVGLPPREPVLSCRSNTYPKGFYCSWHLPTPTYIPNTFNVTVLHGSK
160 170 180 190 200 210
160 170 180 190 200 210
pF1KB6 IMVCEKDPALKNRCHIRYMHLFSTIKYKVSISVSNALGHNATAITFDEFTIVKPDPPENV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IMVCEKDPALKNRCHIRYMHLFSTIKYKVSISVSNALGHNATAITFDEFTIVKPDPPENV
220 230 240 250 260 270
220 230 240 250 260 270
pF1KB6 VARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSDGTAHTITDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSDGTAHTITDA
280 290 300 310 320 330
280 290 300 310 320 330
pF1KB6 YAGKEYIIQVAAKDNEIGTWSDWSVAAHATPWTEEPRHLTTEAQAAETTTSTTSSLAPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YAGKEYIIQVAAKDNEIGTWSDWSVAAHATPWTEEPRHLTTEAQAAETTTSTTSSLAPPP
340 350 360 370 380 390
340 350 360 370
pF1KB6 TTKICDPGELGSGGGPSAPFLVSVPITLALAAAAATASSLLI
::::::::::::::::::::::::::::::::::::::::::
XP_016 TTKICDPGELGSGGGPSAPFLVSVPITLALAAAAATASSLLI
400 410 420 430
>>XP_016869750 (OMIM: 118946) PREDICTED: ciliary neurotr (439 aa)
initn: 2570 init1: 2570 opt: 2570 Z-score: 2517.6 bits: 474.7 E(85289): 1.7e-133
Smith-Waterman score: 2570; 100.0% identity (100.0% similar) in 372 aa overlap (1-372:68-439)
10 20 30
pF1KB6 MAAPVPWACCAVLAAAAAVVYAQRHSPQEA
::::::::::::::::::::::::::::::
XP_016 LTGQRLRVYSSSDGGGAAGSKDTLGLSSSVMAAPVPWACCAVLAAAAAVVYAQRHSPQEA
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB6 PHVQYERLGSDVTLPCGTANWDAAVTWRVNGTDLAPDLLNGSQLVLHGLELGHSGLYACF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PHVQYERLGSDVTLPCGTANWDAAVTWRVNGTDLAPDLLNGSQLVLHGLELGHSGLYACF
100 110 120 130 140 150
100 110 120 130 140 150
pF1KB6 HRDSWHLRHQVLLHVGLPPREPVLSCRSNTYPKGFYCSWHLPTPTYIPNTFNVTVLHGSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HRDSWHLRHQVLLHVGLPPREPVLSCRSNTYPKGFYCSWHLPTPTYIPNTFNVTVLHGSK
160 170 180 190 200 210
160 170 180 190 200 210
pF1KB6 IMVCEKDPALKNRCHIRYMHLFSTIKYKVSISVSNALGHNATAITFDEFTIVKPDPPENV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IMVCEKDPALKNRCHIRYMHLFSTIKYKVSISVSNALGHNATAITFDEFTIVKPDPPENV
220 230 240 250 260 270
220 230 240 250 260 270
pF1KB6 VARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSDGTAHTITDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSDGTAHTITDA
280 290 300 310 320 330
280 290 300 310 320 330
pF1KB6 YAGKEYIIQVAAKDNEIGTWSDWSVAAHATPWTEEPRHLTTEAQAAETTTSTTSSLAPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YAGKEYIIQVAAKDNEIGTWSDWSVAAHATPWTEEPRHLTTEAQAAETTTSTTSSLAPPP
340 350 360 370 380 390
340 350 360 370
pF1KB6 TTKICDPGELGSGGGPSAPFLVSVPITLALAAAAATASSLLI
::::::::::::::::::::::::::::::::::::::::::
XP_016 TTKICDPGELGSGGGPSAPFLVSVPITLALAAAAATASSLLI
400 410 420 430
>>NP_001193795 (OMIM: 147880,614689,614752) interleukin- (352 aa)
initn: 309 init1: 145 opt: 386 Z-score: 386.0 bits: 80.0 E(85289): 9.2e-15
Smith-Waterman score: 431; 30.8% identity (56.5% similar) in 354 aa overlap (10-333:6-352)
10 20 30 40 50
pF1KB6 MAAPVPWACCAVLAA---AAAVVYAQRHSP-QEAPHVQYERL-GSDVTLPC-GTANWD-A
::.::: : ... : :. : ::. . : :..::: : :. : :
NP_001 MLAVGCALLAALLAAPGAALAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNA
10 20 30 40 50
60 70 80 90 100
pF1KB6 AVTW--RVNGTDLAPDLLNG--SQLVLHGLELGHSGLYACFHRDSWHLRHQVLLHVGLPP
.: : : .. :. : .:.:....: :: :.:.. . . : : : .::
NP_001 TVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYR--AGRPAGTVHLLVDVPP
60 70 80 90 100 110
110 120 130 140 150
pF1KB6 REPVLSCRSNTYPKGFYCSWHLPTPTYIPNTFNVTVLHGSKIMV---------CE-KDPA
.:: ::: .. .. : : : :. . .:: :.. :. .. .
NP_001 EEPQLSCFRKSPLSNVVCEWG---PRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQES
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB6 LKNRCHIRYMHLFSTIKYKVSISVSNALGHNATAI-TFDEFTIVKPDPPENVVARPVPSN
: :.. . :.. : ::. :....: . . ::. :..:::: :... : :
NP_001 QKFSCQLAVPEGDSSF-YIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARN
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB6 PRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSDGTAH-TITDAYAGKEYI
:: : :::: : .: . . :.: :::: . ..: : .: ::..: ...
NP_001 PRWLSVTWQDPHSW-NSSFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHV
240 250 260 270 280
280 290 300 310 320 330
pF1KB6 IQVAAKDNE-IGTWSDWSVAAHATPWTEE--PR----HLTTEAQAAETTTSTTSSLAPPP
.:. :... : ::.:: : .::::.. :: ....: . :..: .... ::
NP_001 VQLRAQEEFGQGEWSEWSPEAMGTPWTDRLSPRCPGWSTAVQSQLTATSASWVQAILPPQ
290 300 310 320 330 340
340 350 360 370
pF1KB6 TTKICDPGELGSGGGPSAPFLVSVPITLALAAAAATASSLLI
:
NP_001 PPK
350
372 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 15:56:25 2016 done: Fri Nov 4 15:56:27 2016
Total Scan time: 9.290 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]