Result of FASTA (ccds) for
pF1KB6542
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6542, 391 aa
1>>>pF1KB6542 391 - 391 aa - 391 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8218+/-0.000939; mu= 13.6294+/- 0.056
mean_var=67.1551+/-13.604, 0's: 0 Z-trim(105.1): 27 B-trim: 327 in 1/50
Lambda= 0.156507
statistics sampled from 8232 (8245) to 8232 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.253), width: 16
Scan time: 2.800
The best scores are: opt bits E(32554)
CCDS1991.1 RMND5A gene_id:64795|Hs108|chr2 ( 391) 2642 605.7 2.4e-173
CCDS4431.1 RMND5B gene_id:64777|Hs108|chr5 ( 393) 1908 439.9 1.9e-123
CCDS75382.1 RMND5B gene_id:64777|Hs108|chr5 ( 380) 1733 400.4 1.4e-111
CCDS77888.1 MAEA gene_id:10296|Hs108|chr4 ( 348) 280 72.3 7.5e-13
CCDS75090.1 MAEA gene_id:10296|Hs108|chr4 ( 395) 280 72.3 8.4e-13
CCDS33936.1 MAEA gene_id:10296|Hs108|chr4 ( 396) 280 72.3 8.5e-13
>>CCDS1991.1 RMND5A gene_id:64795|Hs108|chr2 (391 aa)
initn: 2642 init1: 2642 opt: 2642 Z-score: 3225.7 bits: 605.7 E(32554): 2.4e-173
Smith-Waterman score: 2642; 100.0% identity (100.0% similar) in 391 aa overlap (1-391:1-391)
10 20 30 40 50 60
pF1KB6 MDQCVTVERELEKVLHKFSGYGQLCERGLEELIDYTGGLKHEILQSHGQDAELSGTLSLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 MDQCVTVERELEKVLHKFSGYGQLCERGLEELIDYTGGLKHEILQSHGQDAELSGTLSLV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LTQCCKRIKDTVQKLASDHKDIHSSVSRVGKAIDKNFDSDISSVGIDGCWQADSQRLLNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 LTQCCKRIKDTVQKLASDHKDIHSSVSRVGKAIDKNFDSDISSVGIDGCWQADSQRLLNE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 VMVEHFFRQGMLDVAEELCQESGLSVDPSQKEPFVELNRILEALKVRVLRPALEWAVSNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 VMVEHFFRQGMLDVAEELCQESGLSVDPSQKEPFVELNRILEALKVRVLRPALEWAVSNR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 EMLIAQNSSLEFKLHRLYFISLLMGGTTNQREALQYAKNFQPFALNHQKDIQVLMGSLVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 EMLIAQNSSLEFKLHRLYFISLLMGGTTNQREALQYAKNFQPFALNHQKDIQVLMGSLVY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 LRQGIENSPYVHLLDANQWADICDIFTRDACALLGLSVESPLSVSFSAGCVALPALINIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 LRQGIENSPYVHLLDANQWADICDIFTRDACALLGLSVESPLSVSFSAGCVALPALINIK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 AVIEQRQCTGVWNQKDELPIEVDLGKKCWYHSIFACPILRQQTTDNNPPMKLVCGHIISR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 AVIEQRQCTGVWNQKDELPIEVDLGKKCWYHSIFACPILRQQTTDNNPPMKLVCGHIISR
310 320 330 340 350 360
370 380 390
pF1KB6 DALNKMFNGSKLKCPYCPMEQSPGDAKQIFF
:::::::::::::::::::::::::::::::
CCDS19 DALNKMFNGSKLKCPYCPMEQSPGDAKQIFF
370 380 390
>>CCDS4431.1 RMND5B gene_id:64777|Hs108|chr5 (393 aa)
initn: 1911 init1: 1418 opt: 1908 Z-score: 2329.9 bits: 439.9 E(32554): 1.9e-123
Smith-Waterman score: 1908; 70.0% identity (90.3% similar) in 393 aa overlap (1-391:1-393)
10 20 30 40 50 60
pF1KB6 MDQCVTVERELEKVLHKFSGYGQLCERGLEELIDYTGGLKHEILQSHGQDAELSGTLSLV
:.::. :::::.:::.:: ::: :::.::::. :.: :. :. .. : . ::.:::::
CCDS44 MEQCACVERELDKVLQKFLTYGQHCERSLEELLHYVGQLRAELASAALQGTPLSATLSLV
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 LTQCCKRIKDTVQKLASDHKDIHSSVSRVGKAIDKNFDSDISSVGIDGCWQA--DSQRLL
..:::..:::::::::::::::::::::::::::.::::.: .: :. :.: ..:..:
CCDS44 MSQCCRKIKDTVQKLASDHKDIHSSVSRVGKAIDRNFDSEICGVVSDAVWDAREQQQQIL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 NEVMVEHFFRQGMLDVAEELCQESGLSVDPSQKEPFVELNRILEALKVRVLRPALEWAVS
. ..:::...::::.::::::::: :.:: . :.::.:::::::::. . : ::::::::
CCDS44 QMAIVEHLYQQGMLSVAEELCQESTLNVDLDFKQPFLELNRILEALHEQDLGPALEWAVS
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 NREMLIAQNSSLEFKLHRLYFISLLMGGTTNQREALQYAKNFQPFALNHQKDIQVLMGSL
.:. :. :::::::::::.:: :: :: ..: :::.::..::::: ::..:::.::::
CCDS44 HRQRLLELNSSLEFKLHRLHFIRLLAGGPAKQLEALSYARHFQPFARLHQREIQVMMGSL
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB6 VYLRQGIENSPYVHLLDANQWADICDIFTRDACALLGLSVESPLSVSFSAGCVALPALIN
:::: :.:.::: ::::...::.::. ::::::.::::::::::::::..::::::.:.:
CCDS44 VYLRLGLEKSPYCHLLDSSHWAEICETFTRDACSLLGLSVESPLSVSFASGCVALPVLMN
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB6 IKAVIEQRQCTGVWNQKDELPIEVDLGKKCWYHSIFACPILRQQTTDNNPPMKLVCGHII
:::::::::::::::.:::::::..:: ::::::.::::::::::.:.:::.::.:::.:
CCDS44 IKAVIEQRQCTGVWNHKDELPIEIELGMKCWYHSVFACPILRQQTSDSNPPIKLICGHVI
310 320 330 340 350 360
360 370 380 390
pF1KB6 SRDALNKMFNGSKLKCPYCPMEQSPGDAKQIFF
:::::::..::.:::::::::::.:.:.:.:.:
CCDS44 SRDALNKLINGGKLKCPYCPMEQNPADGKRIIF
370 380 390
>>CCDS75382.1 RMND5B gene_id:64777|Hs108|chr5 (380 aa)
initn: 1714 init1: 1418 opt: 1733 Z-score: 2116.6 bits: 400.4 E(32554): 1.4e-111
Smith-Waterman score: 1733; 71.9% identity (91.9% similar) in 345 aa overlap (49-391:36-380)
20 30 40 50 60 70
pF1KB6 SGYGQLCERGLEELIDYTGGLKHEILQSHGQDAELSGTLSLVLTQCCKRIKDTVQKLASD
: . ::.:::::..:::..:::::::::::
CCDS75 LDLPGSSSPPSHLSLLRSWDHRRVPPCPALQGTPLSATLSLVMSQCCRKIKDTVQKLASD
10 20 30 40 50 60
80 90 100 110 120 130
pF1KB6 HKDIHSSVSRVGKAIDKNFDSDISSVGIDGCWQA--DSQRLLNEVMVEHFFRQGMLDVAE
::::::::::::::::.::::.: .: :. :.: ..:..:. ..:::...::::.:::
CCDS75 HKDIHSSVSRVGKAIDRNFDSEICGVVSDAVWDAREQQQQILQMAIVEHLYQQGMLSVAE
70 80 90 100 110 120
140 150 160 170 180 190
pF1KB6 ELCQESGLSVDPSQKEPFVELNRILEALKVRVLRPALEWAVSNREMLIAQNSSLEFKLHR
:::::: :.:: . :.::.:::::::::. . : ::::::::.:. :. ::::::::::
CCDS75 ELCQESTLNVDLDFKQPFLELNRILEALHEQDLGPALEWAVSHRQRLLELNSSLEFKLHR
130 140 150 160 170 180
200 210 220 230 240 250
pF1KB6 LYFISLLMGGTTNQREALQYAKNFQPFALNHQKDIQVLMGSLVYLRQGIENSPYVHLLDA
:.:: :: :: ..: :::.::..::::: ::..:::.:::::::: :.:.::: ::::.
CCDS75 LHFIRLLAGGPAKQLEALSYARHFQPFARLHQREIQVMMGSLVYLRLGLEKSPYCHLLDS
190 200 210 220 230 240
260 270 280 290 300 310
pF1KB6 NQWADICDIFTRDACALLGLSVESPLSVSFSAGCVALPALINIKAVIEQRQCTGVWNQKD
..::.::. ::::::.::::::::::::::..::::::.:.::::::::::::::::.::
CCDS75 SHWAEICETFTRDACSLLGLSVESPLSVSFASGCVALPVLMNIKAVIEQRQCTGVWNHKD
250 260 270 280 290 300
320 330 340 350 360 370
pF1KB6 ELPIEVDLGKKCWYHSIFACPILRQQTTDNNPPMKLVCGHIISRDALNKMFNGSKLKCPY
:::::..:: ::::::.::::::::::.:.:::.::.:::.::::::::..::.::::::
CCDS75 ELPIEIELGMKCWYHSVFACPILRQQTSDSNPPIKLICGHVISRDALNKLINGGKLKCPY
310 320 330 340 350 360
380 390
pF1KB6 CPMEQSPGDAKQIFF
:::::.:.:.:.:.:
CCDS75 CPMEQNPADGKRIIF
370 380
>>CCDS77888.1 MAEA gene_id:10296|Hs108|chr4 (348 aa)
initn: 219 init1: 123 opt: 280 Z-score: 344.2 bits: 72.3 E(32554): 7.5e-13
Smith-Waterman score: 280; 26.3% identity (57.8% similar) in 270 aa overlap (110-375:72-331)
80 90 100 110 120 130
pF1KB6 KDIHSSVSRVGKAIDKNFDSDISSVGIDGCWQADSQRLLNEVMVEHFFRQGMLDVAEELC
:. .. ....::::..: :. ..: .:
CCDS77 QAEDESAKLCKRRIEHLKEHSSDQPAAASVWK---RKRMDRMMVEHLLRCGYYNTAVKLA
50 60 70 80 90
140 150 160 170 180 190
pF1KB6 QESGLSVDPSQKEPFVELNRILEALKVRVLRPALEWAVSNREMLIAQNSSLEFKLHRLYF
..::. : . : :. ... :.:. : : : .:. : ..: :::.:. :
CCDS77 RQSGIE-DLVNIEMFLTAKEVEESLERRETATCLAWCHDNKSRLRKMKSCLEFSLRIQEF
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB6 ISLLMGGTTNQR-EALQYA-KNFQPFALNHQKDIQVLMGSLVYLRQGIENSPYVHLLDAN
: :. :.: .:...: :.:. .. ... :: :.. . ::: :::
CCDS77 IELI---RQNKRLDAVRHARKHFSQAEGSQLDEVRQAMGMLAF-PPDTHISPYKDLLDPA
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB6 QWADICDIFTRDACALLGLSVESPLSVSFSAGCVAL--PALINIKAVIEQRQCTGVWNQK
.: . . : : : :. .: ......:: :. : . . .. .: .
CCDS77 RWRMLIQQFRYDNYRLHQLGNNSVFTLTLQAGLSAIKTPQCYKEDGSSKSPDCPVCSRSL
220 230 240 250 260 270
320 330 340 350 360 370
pF1KB6 DELPIEVDLGKKCWYHSIFACPILRQQTTDNNPPMKLVCGHIISRDALNKMFNGSKLKCP
..: . ... : .: ..: : . ..::::: : :.. . ..: .. . .:. ::
CCDS77 NKLAQPLPMAH-C-ANSRLVCKISGDVMNENNPPMMLPNGYVYGYNSLLSIRQDDKVVCP
280 290 300 310 320 330
380 390
pF1KB6 YCPMEQSPGDAKQIFF
CCDS77 RTKEVFHFSQAEKVYIM
340
>>CCDS75090.1 MAEA gene_id:10296|Hs108|chr4 (395 aa)
initn: 219 init1: 123 opt: 280 Z-score: 343.3 bits: 72.3 E(32554): 8.4e-13
Smith-Waterman score: 280; 26.3% identity (57.8% similar) in 270 aa overlap (110-375:119-378)
80 90 100 110 120 130
pF1KB6 KDIHSSVSRVGKAIDKNFDSDISSVGIDGCWQADSQRLLNEVMVEHFFRQGMLDVAEELC
:. .. ....::::..: :. ..: .:
CCDS75 QAEDESAKLCKRRIEHLKEHSSDQPAAASVWK---RKRMDRMMVEHLLRCGYYNTAVKLA
90 100 110 120 130 140
140 150 160 170 180 190
pF1KB6 QESGLSVDPSQKEPFVELNRILEALKVRVLRPALEWAVSNREMLIAQNSSLEFKLHRLYF
..::. : . : :. ... :.:. : : : .:. : ..: :::.:. :
CCDS75 RQSGIE-DLVNIEMFLTAKEVEESLERRETATCLAWCHDNKSRLRKMKSCLEFSLRIQEF
150 160 170 180 190 200
200 210 220 230 240 250
pF1KB6 ISLLMGGTTNQR-EALQYA-KNFQPFALNHQKDIQVLMGSLVYLRQGIENSPYVHLLDAN
: :. :.: .:...: :.:. .. ... :: :.. . ::: :::
CCDS75 IELI---RQNKRLDAVRHARKHFSQAEGSQLDEVRQAMGMLAF-PPDTHISPYKDLLDPA
210 220 230 240 250 260
260 270 280 290 300 310
pF1KB6 QWADICDIFTRDACALLGLSVESPLSVSFSAGCVAL--PALINIKAVIEQRQCTGVWNQK
.: . . : : : :. .: ......:: :. : . . .. .: .
CCDS75 RWRMLIQQFRYDNYRLHQLGNNSVFTLTLQAGLSAIKTPQCYKEDGSSKSPDCPVCSRSL
270 280 290 300 310 320
320 330 340 350 360 370
pF1KB6 DELPIEVDLGKKCWYHSIFACPILRQQTTDNNPPMKLVCGHIISRDALNKMFNGSKLKCP
..: . ... : .: ..: : . ..::::: : :.. . ..: .. . .:. ::
CCDS75 NKLAQPLPMAH-C-ANSRLVCKISGDVMNENNPPMMLPNGYVYGYNSLLSIRQDDKVVCP
330 340 350 360 370
380 390
pF1KB6 YCPMEQSPGDAKQIFF
CCDS75 RTKEVFHFSQAEKVYIM
380 390
>>CCDS33936.1 MAEA gene_id:10296|Hs108|chr4 (396 aa)
initn: 219 init1: 123 opt: 280 Z-score: 343.3 bits: 72.3 E(32554): 8.5e-13
Smith-Waterman score: 280; 26.3% identity (57.8% similar) in 270 aa overlap (110-375:120-379)
80 90 100 110 120 130
pF1KB6 KDIHSSVSRVGKAIDKNFDSDISSVGIDGCWQADSQRLLNEVMVEHFFRQGMLDVAEELC
:. .. ....::::..: :. ..: .:
CCDS33 QAEDESAKLCKRRIEHLKEHSSDQPAAASVWK---RKRMDRMMVEHLLRCGYYNTAVKLA
90 100 110 120 130 140
140 150 160 170 180 190
pF1KB6 QESGLSVDPSQKEPFVELNRILEALKVRVLRPALEWAVSNREMLIAQNSSLEFKLHRLYF
..::. : . : :. ... :.:. : : : .:. : ..: :::.:. :
CCDS33 RQSGIE-DLVNIEMFLTAKEVEESLERRETATCLAWCHDNKSRLRKMKSCLEFSLRIQEF
150 160 170 180 190 200
200 210 220 230 240 250
pF1KB6 ISLLMGGTTNQR-EALQYA-KNFQPFALNHQKDIQVLMGSLVYLRQGIENSPYVHLLDAN
: :. :.: .:...: :.:. .. ... :: :.. . ::: :::
CCDS33 IELI---RQNKRLDAVRHARKHFSQAEGSQLDEVRQAMGMLAF-PPDTHISPYKDLLDPA
210 220 230 240 250 260
260 270 280 290 300 310
pF1KB6 QWADICDIFTRDACALLGLSVESPLSVSFSAGCVAL--PALINIKAVIEQRQCTGVWNQK
.: . . : : : :. .: ......:: :. : . . .. .: .
CCDS33 RWRMLIQQFRYDNYRLHQLGNNSVFTLTLQAGLSAIKTPQCYKEDGSSKSPDCPVCSRSL
270 280 290 300 310 320
320 330 340 350 360 370
pF1KB6 DELPIEVDLGKKCWYHSIFACPILRQQTTDNNPPMKLVCGHIISRDALNKMFNGSKLKCP
..: . ... : .: ..: : . ..::::: : :.. . ..: .. . .:. ::
CCDS33 NKLAQPLPMAH-C-ANSRLVCKISGDVMNENNPPMMLPNGYVYGYNSLLSIRQDDKVVCP
330 340 350 360 370
380 390
pF1KB6 YCPMEQSPGDAKQIFF
CCDS33 RTKEVFHFSQAEKVYIM
380 390
391 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:02:47 2016 done: Sat Nov 5 04:02:47 2016
Total Scan time: 2.800 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]