FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6535, 367 aa
  1>>>pF1KB6535 367 - 367 aa - 367 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8553+/-0.00085; mu= 2.6372+/- 0.052
 mean_var=233.8146+/-47.175, 0's: 0 Z-trim(115.5): 6  B-trim: 0 in 0/55
 Lambda= 0.083876
 statistics sampled from 16047 (16053) to 16047 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.802), E-opt: 0.2 (0.493), width:  16
 Scan time:  2.920

The best scores are:                                      opt bits E(32554)
CCDS3278.1 AHSG gene_id:197|Hs108|chr3             ( 367) 2542 319.8 2.3e-87


>>CCDS3278.1 AHSG gene_id:197|Hs108|chr3                  (367 aa)
 initn: 2542 init1: 2542 opt: 2542  Z-score: 1682.0  bits: 319.8 E(32554): 2.3e-87
Smith-Waterman score: 2542; 100.0% identity (100.0% similar) in 367 aa overlap (1-367:1-367)

               10        20        30        40        50        60
pF1KB6 MKSLVLLLCLAQLWGCHSAPHGPGLIYRQPNCDDPETEEAALVAIDYINQNLPWGYKHTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MKSLVLLLCLAQLWGCHSAPHGPGLIYRQPNCDDPETEEAALVAIDYINQNLPWGYKHTL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 NQIDEVKVWPQQPSGELFEIEIDTLETTCHVLDPTPVARCSVRQLKEHAVEGDCDFQLLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NQIDEVKVWPQQPSGELFEIEIDTLETTCHVLDPTPVARCSVRQLKEHAVEGDCDFQLLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LDGKFSVVYAKCDSSPDSAEDVRKVCQDCPLLAPLNDTRVVHAAKAALAAFNAQNNGSNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LDGKFSVVYAKCDSSPDSAEDVRKVCQDCPLLAPLNDTRVVHAAKAALAAFNAQNNGSNF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 QLEEISRAQLVPLPPSTYVEFTVSGTDCVAKEATEAAKCNLLAEKQYGFCKATLSEKLGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QLEEISRAQLVPLPPSTYVEFTVSGTDCVAKEATEAAKCNLLAEKQYGFCKATLSEKLGG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 AEVAVTCMVFQTQPVSSQPQPEGANEAVPTPVVDPDAPPSPPLGAPGLPPAGSPPDSHVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AEVAVTCMVFQTQPVSSQPQPEGANEAVPTPVVDPDAPPSPPLGAPGLPPAGSPPDSHVL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 LAAPPGHQLHRAHYDLRHTFMGVVSLGSPSGEVSHPRKTRTVVQPSVGAAAGPVVPPCPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LAAPPGHQLHRAHYDLRHTFMGVVSLGSPSGEVSHPRKTRTVVQPSVGAAAGPVVPPCPG
              310       320       330       340       350       360

              
pF1KB6 RIRHFKV
       :::::::
CCDS32 RIRHFKV
              




367 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 16:55:41 2016 done: Sat Nov  5 16:55:42 2016
 Total Scan time:  2.920 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]