Result of FASTA (ccds) for
pF1KB6527
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6527, 365 aa
1>>>pF1KB6527 365 - 365 aa - 365 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.0506+/-0.00102; mu= 3.5100+/- 0.060
mean_var=214.7020+/-51.210, 0's: 0 Z-trim(111.2): 110 B-trim: 602 in 1/49
Lambda= 0.087530
statistics sampled from 12042 (12157) to 12042 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.732), E-opt: 0.2 (0.373), width: 16
Scan time: 2.440
The best scores are: opt bits E(32554)
CCDS2147.1 LIMS2 gene_id:55679|Hs108|chr2 ( 365) 2676 350.8 1.1e-96
CCDS54395.1 LIMS2 gene_id:55679|Hs108|chr2 ( 341) 2489 327.1 1.4e-89
CCDS54396.1 LIMS2 gene_id:55679|Hs108|chr2 ( 363) 2488 327.0 1.6e-89
CCDS54394.1 LIMS2 gene_id:55679|Hs108|chr2 ( 336) 2481 326.1 2.7e-89
CCDS54384.1 LIMS1 gene_id:3987|Hs108|chr2 ( 362) 2204 291.2 9.7e-79
CCDS54383.1 LIMS1 gene_id:3987|Hs108|chr2 ( 329) 2161 285.7 3.9e-77
CCDS54382.1 LIMS1 gene_id:3987|Hs108|chr2 ( 337) 2159 285.4 4.8e-77
CCDS54385.1 LIMS1 gene_id:3987|Hs108|chr2 ( 387) 2159 285.5 5.2e-77
CCDS2078.1 LIMS1 gene_id:3987|Hs108|chr2 ( 325) 2152 284.5 8.6e-77
CCDS58725.1 LIMS2 gene_id:55679|Hs108|chr2 ( 189) 1371 185.7 2.9e-47
CCDS75166.1 PDLIM5 gene_id:10611|Hs108|chr4 ( 271) 470 72.1 6.5e-13
CCDS47102.1 PDLIM5 gene_id:10611|Hs108|chr4 ( 487) 470 72.3 9.9e-13
CCDS4423.1 PDLIM7 gene_id:9260|Hs108|chr5 ( 423) 468 72.0 1.1e-12
CCDS4422.1 PDLIM7 gene_id:9260|Hs108|chr5 ( 457) 468 72.0 1.1e-12
CCDS3641.1 PDLIM5 gene_id:10611|Hs108|chr4 ( 596) 470 72.4 1.1e-12
CCDS58916.1 PDLIM5 gene_id:10611|Hs108|chr4 ( 625) 470 72.4 1.2e-12
CCDS58917.1 PDLIM5 gene_id:10611|Hs108|chr4 ( 483) 448 69.5 6.7e-12
CCDS5035.1 FHL5 gene_id:9457|Hs108|chr6 ( 284) 418 65.5 6.4e-11
>>CCDS2147.1 LIMS2 gene_id:55679|Hs108|chr2 (365 aa)
initn: 2676 init1: 2676 opt: 2676 Z-score: 1849.2 bits: 350.8 E(32554): 1.1e-96
Smith-Waterman score: 2676; 100.0% identity (100.0% similar) in 365 aa overlap (1-365:1-365)
10 20 30 40 50 60
pF1KB6 MAARLGALAASGLYRRRQHRQSPPPATGNMSDALANAVCQRCQARFSPAERIVNSNGELY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MAARLGALAASGLYRRRQHRQSPPPATGNMSDALANAVCQRCQARFSPAERIVNSNGELY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 PGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 DAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 WHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 WHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 CVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 CVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKAT
310 320 330 340 350 360
pF1KB6 DLNSA
:::::
CCDS21 DLNSA
>>CCDS54395.1 LIMS2 gene_id:55679|Hs108|chr2 (341 aa)
initn: 2488 init1: 2488 opt: 2489 Z-score: 1721.9 bits: 327.1 E(32554): 1.4e-89
Smith-Waterman score: 2489; 99.7% identity (99.7% similar) in 340 aa overlap (27-365:2-341)
10 20 30 40 50
pF1KB6 MAARLGALAASGLYRRRQHRQSPPPATG-NMSDALANAVCQRCQARFSPAERIVNSNGEL
:: :::::::::::::::::::::::::::::::
CCDS54 MTGSNMSDALANAVCQRCQARFSPAERIVNSNGEL
10 20 30
60 70 80 90 100 110
pF1KB6 YHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNW
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB6 HPGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 HPGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFR
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB6 SDAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SDAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGK
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB6 QWHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QWHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKA
220 230 240 250 260 270
300 310 320 330 340 350
pF1KB6 WCVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 WCVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKA
280 290 300 310 320 330
360
pF1KB6 TDLNSA
::::::
CCDS54 TDLNSA
340
>>CCDS54396.1 LIMS2 gene_id:55679|Hs108|chr2 (363 aa)
initn: 2488 init1: 2488 opt: 2488 Z-score: 1720.9 bits: 327.0 E(32554): 1.6e-89
Smith-Waterman score: 2488; 100.0% identity (100.0% similar) in 337 aa overlap (29-365:27-363)
10 20 30 40 50 60
pF1KB6 MAARLGALAASGLYRRRQHRQSPPPATGNMSDALANAVCQRCQARFSPAERIVNSNGELY
::::::::::::::::::::::::::::::::
CCDS54 MTGRKRKWGETGTGSGAAPAAALRWSNMSDALANAVCQRCQARFSPAERIVNSNGELY
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWH
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 PGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRS
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 DAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQ
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB6 WHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 WHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAW
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB6 CVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 CVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKAT
300 310 320 330 340 350
pF1KB6 DLNSA
:::::
CCDS54 DLNSA
360
>>CCDS54394.1 LIMS2 gene_id:55679|Hs108|chr2 (336 aa)
initn: 2481 init1: 2481 opt: 2481 Z-score: 1716.5 bits: 326.1 E(32554): 2.7e-89
Smith-Waterman score: 2481; 100.0% identity (100.0% similar) in 336 aa overlap (30-365:1-336)
10 20 30 40 50 60
pF1KB6 MAARLGALAASGLYRRRQHRQSPPPATGNMSDALANAVCQRCQARFSPAERIVNSNGELY
:::::::::::::::::::::::::::::::
CCDS54 MSDALANAVCQRCQARFSPAERIVNSNGELY
10 20 30
70 80 90 100 110 120
pF1KB6 HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWH
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 PGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRS
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 DAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQ
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB6 WHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 WHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAW
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB6 CVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 CVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKAT
280 290 300 310 320 330
pF1KB6 DLNSA
:::::
CCDS54 DLNSA
>>CCDS54384.1 LIMS1 gene_id:3987|Hs108|chr2 (362 aa)
initn: 2165 init1: 2165 opt: 2204 Z-score: 1527.1 bits: 291.2 E(32554): 9.7e-79
Smith-Waterman score: 2204; 80.8% identity (92.5% similar) in 360 aa overlap (2-354:3-362)
10 20 30 40 50
pF1KB6 MAARLGALAASGLYRRRQHRQS-------PPPATGNMSDALANAVCQRCQARFSPAERI
: .: :. :::::::. : . : .::..:::.:.:.::.. :.:::.:
CCDS54 MTALQLKELSHSGLYRRRRDRPDSLRVNGLPEEELSNMANALASATCERCKGGFAPAEKI
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 VNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVI
::::::::::.::::::::. ::::::::::::::::::::::::::: .::::::::::
CCDS54 VNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVI
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 KAMNNNWHPGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVID
:::::.::: ::::.::. :::.::::::::::::::::::::.::::::::.:: .::
CCDS54 KAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIID
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 EQPLMFRSDAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGR
::::.:..: ::::::::..:::::::.::::::::::::::::::::::::::::::::
CCDS54 EQPLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGR
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB6 VVNALGKQWHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDV
::::.:::::::::::::::::::::::::.::::::::::::::::::..:..::::::
CCDS54 VVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDV
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB6 VSALNKAWCVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTS
::::::::::.::.:::::.::::::::::::::::::.::::::::::::::::.: .
CCDS54 VSALNKAWCVNCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLG
310 320 330 340 350 360
360
pF1KB6 RKAQPKATDLNSA
::
CCDS54 RK
>>CCDS54383.1 LIMS1 gene_id:3987|Hs108|chr2 (329 aa)
initn: 2161 init1: 2161 opt: 2161 Z-score: 1498.3 bits: 285.7 E(32554): 3.9e-77
Smith-Waterman score: 2161; 85.4% identity (96.6% similar) in 328 aa overlap (27-354:2-329)
10 20 30 40 50 60
pF1KB6 MAARLGALAASGLYRRRQHRQSPPPATGNMSDALANAVCQRCQARFSPAERIVNSNGELY
: ::..:::.:.:.::.. :.:::.:::::::::
CCDS54 MTCNMANALASATCERCKGGFAPAEKIVNSNGELY
10 20 30
70 80 90 100 110 120
pF1KB6 HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWH
::.::::::::. ::::::::::::::::::::::::::: .:::::::::::::::.::
CCDS54 HEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWH
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 PGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRS
: ::::.::. :::.::::::::::::::::::::.::::::::.:: .::::::.:..
CCDS54 PECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKN
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 DAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQ
: ::::::::..:::::::.::::::::::::::::::::::::::::::::::::.:::
CCDS54 DPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQ
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB6 WHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAW
::::::::::::::::::::::.::::::::::::::::::..:..::::::::::::::
CCDS54 WHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAW
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB6 CVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKAT
::.::.:::::.::::::::::::::::::.::::::::::::::::.: .::
CCDS54 CVNCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK
280 290 300 310 320
pF1KB6 DLNSA
>>CCDS54382.1 LIMS1 gene_id:3987|Hs108|chr2 (337 aa)
initn: 2159 init1: 2159 opt: 2159 Z-score: 1496.8 bits: 285.4 E(32554): 4.8e-77
Smith-Waterman score: 2159; 85.6% identity (96.9% similar) in 326 aa overlap (29-354:12-337)
10 20 30 40 50 60
pF1KB6 MAARLGALAASGLYRRRQHRQSPPPATGNMSDALANAVCQRCQARFSPAERIVNSNGELY
::..:::.:.:.::.. :.:::.:::::::::
CCDS54 MLGVAAGMTHSNMANALASATCERCKGGFAPAEKIVNSNGELY
10 20 30 40
70 80 90 100 110 120
pF1KB6 HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWH
::.::::::::. ::::::::::::::::::::::::::: .:::::::::::::::.::
CCDS54 HEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWH
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB6 PGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRS
: ::::.::. :::.::::::::::::::::::::.::::::::.:: .::::::.:..
CCDS54 PECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKN
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB6 DAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQ
: ::::::::..:::::::.::::::::::::::::::::::::::::::::::::.:::
CCDS54 DPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQ
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB6 WHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAW
::::::::::::::::::::::.::::::::::::::::::..:..::::::::::::::
CCDS54 WHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAW
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB6 CVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKAT
::.::.:::::.::::::::::::::::::.::::::::::::::::.: .::
CCDS54 CVNCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK
290 300 310 320 330
pF1KB6 DLNSA
>>CCDS54385.1 LIMS1 gene_id:3987|Hs108|chr2 (387 aa)
initn: 2159 init1: 2159 opt: 2159 Z-score: 1496.0 bits: 285.5 E(32554): 5.2e-77
Smith-Waterman score: 2159; 85.6% identity (96.9% similar) in 326 aa overlap (29-354:62-387)
10 20 30 40 50
pF1KB6 MAARLGALAASGLYRRRQHRQSPPPATGNMSDALANAVCQRCQARFSPAERIVNSNGE
::..:::.:.:.::.. :.:::.:::::::
CCDS54 TEDERAVSKLQRRHSDVKVYKEFCDFYAKFNMANALASATCERCKGGFAPAEKIVNSNGE
40 50 60 70 80 90
60 70 80 90 100 110
pF1KB6 LYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNN
::::.::::::::. ::::::::::::::::::::::::::: .:::::::::::::::.
CCDS54 LYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNS
100 110 120 130 140 150
120 130 140 150 160 170
pF1KB6 WHPGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMF
::: ::::.::. :::.::::::::::::::::::::.::::::::.:: .::::::.:
CCDS54 WHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIF
160 170 180 190 200 210
180 190 200 210 220 230
pF1KB6 RSDAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALG
..: ::::::::..:::::::.::::::::::::::::::::::::::::::::::::.:
CCDS54 KNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMG
220 230 240 250 260 270
240 250 260 270 280 290
pF1KB6 KQWHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNK
::::::::::::::::::::::::.::::::::::::::::::..:..::::::::::::
CCDS54 KQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNK
280 290 300 310 320 330
300 310 320 330 340 350
pF1KB6 AWCVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPK
::::.::.:::::.::::::::::::::::::.::::::::::::::::.: .::
CCDS54 AWCVNCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK
340 350 360 370 380
360
pF1KB6 ATDLNSA
>>CCDS2078.1 LIMS1 gene_id:3987|Hs108|chr2 (325 aa)
initn: 2152 init1: 2152 opt: 2152 Z-score: 1492.2 bits: 284.5 E(32554): 8.6e-77
Smith-Waterman score: 2152; 85.5% identity (96.9% similar) in 325 aa overlap (30-354:1-325)
10 20 30 40 50 60
pF1KB6 MAARLGALAASGLYRRRQHRQSPPPATGNMSDALANAVCQRCQARFSPAERIVNSNGELY
:..:::.:.:.::.. :.:::.:::::::::
CCDS20 MANALASATCERCKGGFAPAEKIVNSNGELY
10 20 30
70 80 90 100 110 120
pF1KB6 HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWH
::.::::::::. ::::::::::::::::::::::::::: .:::::::::::::::.::
CCDS20 HEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWH
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 PGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRS
: ::::.::. :::.::::::::::::::::::::.::::::::.:: .::::::.:..
CCDS20 PECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKN
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 DAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQ
: ::::::::..:::::::.::::::::::::::::::::::::::::::::::::.:::
CCDS20 DPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQ
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB6 WHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAW
::::::::::::::::::::::.::::::::::::::::::..:..::::::::::::::
CCDS20 WHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAW
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB6 CVSCFSCSTCNSKLTLKNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKAT
::.::.:::::.::::::::::::::::::.::::::::::::::::.: .::
CCDS20 CVNCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK
280 290 300 310 320
pF1KB6 DLNSA
>>CCDS58725.1 LIMS2 gene_id:55679|Hs108|chr2 (189 aa)
initn: 1371 init1: 1371 opt: 1371 Z-score: 962.1 bits: 185.7 E(32554): 2.9e-47
Smith-Waterman score: 1371; 100.0% identity (100.0% similar) in 189 aa overlap (177-365:1-189)
150 160 170 180 190 200
pF1KB6 CRPCHNREKAKGLGKYICQRCHLVIDEQPLMFRSDAYHPDHFNCTHCGKELTAEARELKG
::::::::::::::::::::::::::::::
CCDS58 MFRSDAYHPDHFNCTHCGKELTAEARELKG
10 20 30
210 220 230 240 250 260
pF1KB6 ELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQWHVEHFVCAKCEKPFLGHRHYEKKGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQWHVEHFVCAKCEKPFLGHRHYEKKGL
40 50 60 70 80 90
270 280 290 300 310 320
pF1KB6 AYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAWCVSCFSCSTCNSKLTLKNKFVEFDMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 AYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAWCVSCFSCSTCNSKLTLKNKFVEFDMK
100 110 120 130 140 150
330 340 350 360
pF1KB6 PVCKRCYEKFPLELKKRLKKLSELTSRKAQPKATDLNSA
:::::::::::::::::::::::::::::::::::::::
CCDS58 PVCKRCYEKFPLELKKRLKKLSELTSRKAQPKATDLNSA
160 170 180
365 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:13:59 2016 done: Fri Nov 4 23:14:00 2016
Total Scan time: 2.440 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]