Result of FASTA (omim) for
pF1KB6514
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6514, 371 aa
1>>>pF1KB6514 371 - 371 aa - 371 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.5217+/-0.000494; mu= 24.5472+/- 0.032
mean_var=231.0003+/-52.992, 0's: 0 Z-trim(113.3): 374 B-trim: 0 in 0/57
Lambda= 0.084386
statistics sampled from 22075 (22553) to 22075 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.631), E-opt: 0.2 (0.264), width: 16
Scan time: 7.500
The best scores are: opt bits E(85289)
NP_001281277 (OMIM: 168360) ELAV-like protein 4 is ( 371) 2447 311.5 2e-84
NP_001311143 (OMIM: 168360) ELAV-like protein 4 is ( 365) 2393 304.9 1.9e-82
NP_001311141 (OMIM: 168360) ELAV-like protein 4 is ( 365) 2393 304.9 1.9e-82
NP_001138246 (OMIM: 168360) ELAV-like protein 4 is ( 366) 2393 304.9 1.9e-82
NP_001138247 (OMIM: 168360) ELAV-like protein 4 is ( 402) 2393 305.0 2e-82
NP_001138248 (OMIM: 168360) ELAV-like protein 4 is ( 366) 2390 304.5 2.5e-82
NP_001138249 (OMIM: 168360) ELAV-like protein 4 is ( 369) 2386 304.1 3.5e-82
XP_016856027 (OMIM: 168360) PREDICTED: ELAV-like p ( 379) 2386 304.1 3.5e-82
XP_016856028 (OMIM: 168360) PREDICTED: ELAV-like p ( 359) 2366 301.6 1.9e-81
XP_011516076 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 2176 278.5 1.8e-74
XP_016869899 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 2176 278.5 1.8e-74
XP_016869897 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 2176 278.5 1.8e-74
XP_016869898 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 2176 278.5 1.8e-74
XP_016869902 (OMIM: 601673) PREDICTED: ELAV-like p ( 387) 2174 278.3 2.1e-74
XP_016869903 (OMIM: 601673) PREDICTED: ELAV-like p ( 387) 2174 278.3 2.1e-74
XP_016869904 (OMIM: 601673) PREDICTED: ELAV-like p ( 376) 2170 277.8 2.9e-74
XP_016869906 (OMIM: 601673) PREDICTED: ELAV-like p ( 373) 2167 277.4 3.7e-74
XP_006716798 (OMIM: 601673) PREDICTED: ELAV-like p ( 389) 2164 277.1 4.8e-74
XP_011516081 (OMIM: 601673) PREDICTED: ELAV-like p ( 389) 2164 277.1 4.8e-74
XP_011516082 (OMIM: 601673) PREDICTED: ELAV-like p ( 389) 2164 277.1 4.8e-74
XP_006716797 (OMIM: 601673) PREDICTED: ELAV-like p ( 389) 2164 277.1 4.8e-74
XP_016869901 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 2162 276.8 5.7e-74
XP_016869900 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 2162 276.8 5.7e-74
XP_016869909 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 2157 276.1 8.5e-74
XP_016869911 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 2157 276.1 8.5e-74
XP_016869912 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 2157 276.1 8.5e-74
XP_016869908 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 2157 276.1 8.5e-74
NP_004423 (OMIM: 601673) ELAV-like protein 2 isofo ( 359) 2157 276.1 8.5e-74
XP_016869910 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 2157 276.1 8.5e-74
XP_011516085 (OMIM: 601673) PREDICTED: ELAV-like p ( 374) 2155 275.9 1e-73
XP_011516080 (OMIM: 601673) PREDICTED: ELAV-like p ( 392) 2155 276.0 1e-73
XP_005251452 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 2145 274.7 2.3e-73
XP_011516088 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 2145 274.7 2.3e-73
XP_011516086 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 2145 274.7 2.3e-73
XP_016869907 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 2145 274.7 2.3e-73
XP_006716799 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 2145 274.7 2.3e-73
XP_005251450 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 2145 274.7 2.3e-73
XP_005251451 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 2145 274.7 2.3e-73
XP_011516087 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 2145 274.7 2.3e-73
NP_115657 (OMIM: 603458) ELAV-like protein 3 isofo ( 360) 1943 250.1 5.9e-66
XP_011526080 (OMIM: 603458) PREDICTED: ELAV-like p ( 366) 1919 247.2 4.5e-65
NP_001411 (OMIM: 603458) ELAV-like protein 3 isofo ( 367) 1919 247.2 4.5e-65
NP_001311142 (OMIM: 168360) ELAV-like protein 4 is ( 385) 1714 222.3 1.5e-57
XP_011539196 (OMIM: 168360) PREDICTED: ELAV-like p ( 379) 1660 215.7 1.4e-55
XP_011539197 (OMIM: 168360) PREDICTED: ELAV-like p ( 379) 1660 215.7 1.4e-55
NP_068771 (OMIM: 168360) ELAV-like protein 4 isofo ( 380) 1660 215.7 1.4e-55
XP_011539191 (OMIM: 168360) PREDICTED: ELAV-like p ( 416) 1660 215.8 1.5e-55
XP_011539195 (OMIM: 168360) PREDICTED: ELAV-like p ( 380) 1657 215.3 1.8e-55
NP_001311137 (OMIM: 168360) ELAV-like protein 4 is ( 383) 1653 214.8 2.6e-55
XP_006710474 (OMIM: 168360) PREDICTED: ELAV-like p ( 393) 1653 214.9 2.6e-55
>>NP_001281277 (OMIM: 168360) ELAV-like protein 4 isofor (371 aa)
initn: 2447 init1: 2447 opt: 2447 Z-score: 1636.6 bits: 311.5 E(85289): 2e-84
Smith-Waterman score: 2447; 100.0% identity (100.0% similar) in 371 aa overlap (1-371:1-371)
10 20 30 40 50 60
pF1KB6 MEWNGLKMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEWNGLKMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 GFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 PLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ
310 320 330 340 350 360
370
pF1KB6 VSFKTNKAHKS
:::::::::::
NP_001 VSFKTNKAHKS
370
>>NP_001311143 (OMIM: 168360) ELAV-like protein 4 isofor (365 aa)
initn: 2393 init1: 2393 opt: 2393 Z-score: 1601.1 bits: 304.9 E(85289): 1.9e-82
Smith-Waterman score: 2393; 100.0% identity (100.0% similar) in 364 aa overlap (8-371:2-365)
10 20 30 40 50 60
pF1KB6 MEWNGLKMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQ
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 GFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB6 PLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSD
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB6 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ
300 310 320 330 340 350
370
pF1KB6 VSFKTNKAHKS
:::::::::::
NP_001 VSFKTNKAHKS
360
>>NP_001311141 (OMIM: 168360) ELAV-like protein 4 isofor (365 aa)
initn: 2393 init1: 2393 opt: 2393 Z-score: 1601.1 bits: 304.9 E(85289): 1.9e-82
Smith-Waterman score: 2393; 100.0% identity (100.0% similar) in 364 aa overlap (8-371:2-365)
10 20 30 40 50 60
pF1KB6 MEWNGLKMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQ
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 GFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB6 PLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSD
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB6 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ
300 310 320 330 340 350
370
pF1KB6 VSFKTNKAHKS
:::::::::::
NP_001 VSFKTNKAHKS
360
>>NP_001138246 (OMIM: 168360) ELAV-like protein 4 isofor (366 aa)
initn: 2393 init1: 2393 opt: 2393 Z-score: 1601.1 bits: 304.9 E(85289): 1.9e-82
Smith-Waterman score: 2393; 100.0% identity (100.0% similar) in 364 aa overlap (8-371:3-366)
10 20 30 40 50 60
pF1KB6 MEWNGLKMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQ
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 GFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB6 PLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSD
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB6 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ
300 310 320 330 340 350
370
pF1KB6 VSFKTNKAHKS
:::::::::::
NP_001 VSFKTNKAHKS
360
>>NP_001138247 (OMIM: 168360) ELAV-like protein 4 isofor (402 aa)
initn: 2393 init1: 2393 opt: 2393 Z-score: 1600.9 bits: 305.0 E(85289): 2e-82
Smith-Waterman score: 2393; 100.0% identity (100.0% similar) in 364 aa overlap (8-371:39-402)
10 20 30
pF1KB6 MEWNGLKMIISTMEPQVSNGPTSNTSNGPSSNNRNCP
::::::::::::::::::::::::::::::
NP_001 GCVHGGKGLTDMRLLLLREIVINESRNCSFMIISTMEPQVSNGPTSNTSNGPSSNNRNCP
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB6 SPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFV
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB6 NYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB6 SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANN
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB6 PSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVG
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB6 MNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMT
310 320 330 340 350 360
340 350 360 370
pF1KB6 NYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHKS
::::::::::::::::::::::::::::::::::
NP_001 NYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHKS
370 380 390 400
>>NP_001138248 (OMIM: 168360) ELAV-like protein 4 isofor (366 aa)
initn: 2390 init1: 2390 opt: 2390 Z-score: 1599.2 bits: 304.5 E(85289): 2.5e-82
Smith-Waterman score: 2390; 99.2% identity (100.0% similar) in 366 aa overlap (6-371:1-366)
10 20 30 40 50 60
pF1KB6 MEWNGLKMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQ
...::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEQIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQ
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 GFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB6 PLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSD
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB6 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ
300 310 320 330 340 350
370
pF1KB6 VSFKTNKAHKS
:::::::::::
NP_001 VSFKTNKAHKS
360
>>NP_001138249 (OMIM: 168360) ELAV-like protein 4 isofor (369 aa)
initn: 2386 init1: 2386 opt: 2386 Z-score: 1596.5 bits: 304.1 E(85289): 3.5e-82
Smith-Waterman score: 2386; 100.0% identity (100.0% similar) in 363 aa overlap (9-371:7-369)
10 20 30 40 50 60
pF1KB6 MEWNGLKMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRLKNQIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQ
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 GFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB6 PLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSD
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB6 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ
300 310 320 330 340 350
370
pF1KB6 VSFKTNKAHKS
:::::::::::
NP_001 VSFKTNKAHKS
360
>>XP_016856027 (OMIM: 168360) PREDICTED: ELAV-like prote (379 aa)
initn: 2386 init1: 2386 opt: 2386 Z-score: 1596.4 bits: 304.1 E(85289): 3.5e-82
Smith-Waterman score: 2386; 100.0% identity (100.0% similar) in 363 aa overlap (9-371:17-379)
10 20 30 40 50
pF1KB6 MEWNGLKMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTN
::::::::::::::::::::::::::::::::::::::::::::
XP_016 MFEISRTLNAALLNNEIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQ
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB6 SPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFV
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB6 YNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGY
310 320 330 340 350 360
360 370
pF1KB6 RLGDRVLQVSFKTNKAHKS
:::::::::::::::::::
XP_016 RLGDRVLQVSFKTNKAHKS
370
>>XP_016856028 (OMIM: 168360) PREDICTED: ELAV-like prote (359 aa)
initn: 2366 init1: 2366 opt: 2366 Z-score: 1583.4 bits: 301.6 E(85289): 1.9e-81
Smith-Waterman score: 2366; 100.0% identity (100.0% similar) in 359 aa overlap (13-371:1-359)
10 20 30 40 50 60
pF1KB6 MEWNGLKMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQ
::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQ
10 20 30 40
70 80 90 100 110 120
pF1KB6 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB6 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB6 GFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB6 PLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSD
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB6 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ
290 300 310 320 330 340
370
pF1KB6 VSFKTNKAHKS
:::::::::::
XP_016 VSFKTNKAHKS
350
>>XP_011516076 (OMIM: 601673) PREDICTED: ELAV-like prote (388 aa)
initn: 2508 init1: 2090 opt: 2176 Z-score: 1458.2 bits: 278.5 E(85289): 1.8e-74
Smith-Waterman score: 2176; 88.4% identity (97.0% similar) in 370 aa overlap (3-371:22-388)
10 20 30 40
pF1KB6 MEWNGLKMIISTMEPQVSNGPT-SNTSNGPSSNNRNCPSPM
:.: ..:..:: :.::::: .::.:::.. : :: ::.
XP_011 MAVRLCDVASLLRSGSWAAEPWTG--QVIAAMETQLSNGPTCNNTANGPTTINNNCSSPV
10 20 30 40 50
50 60 70 80 90 100
pF1KB6 QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI
..: .:.:::::::::::::::::::..::::::::::::::::::::::::::::::::
XP_011 DSG-NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB6 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQY
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB6 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQ
:::::::::::::::.::::::::::::::::::::::::::: ::::::::::::::::
XP_011 GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQ
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB6 KSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNI
:..::.:::::::::::::::: .::::::::::::::::::::::.::::::::.:.::
XP_011 KTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINI
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB6 PGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYD
::: :::::::::::.::.:::.:::.:::::::.:::::::::::::::::::::::::
XP_011 PGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYD
300 310 320 330 340 350
350 360 370
pF1KB6 EAAMAIASLNGYRLGDRVLQVSFKTNKAHKS
:::::::::::::::::::::::::::.::.
XP_011 EAAMAIASLNGYRLGDRVLQVSFKTNKTHKA
360 370 380
371 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:14:41 2016 done: Fri Nov 4 16:14:42 2016
Total Scan time: 7.500 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]