Result of FASTA (ccds) for
pF1KB6514
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6514, 371 aa
1>>>pF1KB6514 371 - 371 aa - 371 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9252+/-0.00117; mu= 14.6923+/- 0.071
mean_var=143.1927+/-31.327, 0's: 0 Z-trim(105.5): 173 B-trim: 419 in 1/50
Lambda= 0.107180
statistics sampled from 8240 (8459) to 8240 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.26), width: 16
Scan time: 2.030
The best scores are: opt bits E(32554)
CCDS72788.1 ELAVL4 gene_id:1996|Hs108|chr1 ( 371) 2447 390.5 1.2e-108
CCDS44140.1 ELAVL4 gene_id:1996|Hs108|chr1 ( 366) 2393 382.2 4e-106
CCDS44139.2 ELAVL4 gene_id:1996|Hs108|chr1 ( 402) 2393 382.2 4.2e-106
CCDS44138.1 ELAVL4 gene_id:1996|Hs108|chr1 ( 366) 2390 381.7 5.5e-106
CCDS53315.1 ELAVL4 gene_id:1996|Hs108|chr1 ( 369) 2386 381.1 8.5e-106
CCDS6515.1 ELAVL2 gene_id:1993|Hs108|chr9 ( 359) 2157 345.7 3.8e-95
CCDS45978.1 ELAVL3 gene_id:1995|Hs108|chr19 ( 360) 1943 312.6 3.5e-85
CCDS32912.1 ELAVL3 gene_id:1995|Hs108|chr19 ( 367) 1919 308.9 4.6e-84
CCDS81321.1 ELAVL4 gene_id:1996|Hs108|chr1 ( 385) 1714 277.2 1.7e-74
CCDS553.1 ELAVL4 gene_id:1996|Hs108|chr1 ( 380) 1660 268.9 5.4e-72
CCDS55298.1 ELAVL2 gene_id:1993|Hs108|chr9 ( 346) 1393 227.5 1.4e-59
CCDS12193.1 ELAVL1 gene_id:1994|Hs108|chr19 ( 326) 1036 172.3 5.4e-43
CCDS54557.1 RBMS3 gene_id:27303|Hs108|chr3 ( 433) 397 73.6 3.6e-13
CCDS33725.1 RBMS3 gene_id:27303|Hs108|chr3 ( 419) 394 73.1 4.9e-13
CCDS33726.1 RBMS3 gene_id:27303|Hs108|chr3 ( 420) 394 73.1 4.9e-13
CCDS54558.1 RBMS3 gene_id:27303|Hs108|chr3 ( 421) 394 73.1 4.9e-13
CCDS33724.1 RBMS3 gene_id:27303|Hs108|chr3 ( 437) 394 73.2 5e-13
CCDS2213.1 RBMS1 gene_id:5937|Hs108|chr2 ( 406) 386 71.9 1.1e-12
CCDS8923.1 RBMS2 gene_id:5939|Hs108|chr12 ( 407) 366 68.8 9.6e-12
>>CCDS72788.1 ELAVL4 gene_id:1996|Hs108|chr1 (371 aa)
initn: 2447 init1: 2447 opt: 2447 Z-score: 2063.8 bits: 390.5 E(32554): 1.2e-108
Smith-Waterman score: 2447; 100.0% identity (100.0% similar) in 371 aa overlap (1-371:1-371)
10 20 30 40 50 60
pF1KB6 MEWNGLKMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MEWNGLKMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 GFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 GFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 PLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 PLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ
310 320 330 340 350 360
370
pF1KB6 VSFKTNKAHKS
:::::::::::
CCDS72 VSFKTNKAHKS
370
>>CCDS44140.1 ELAVL4 gene_id:1996|Hs108|chr1 (366 aa)
initn: 2393 init1: 2393 opt: 2393 Z-score: 2018.8 bits: 382.2 E(32554): 4e-106
Smith-Waterman score: 2393; 100.0% identity (100.0% similar) in 364 aa overlap (8-371:3-366)
10 20 30 40 50 60
pF1KB6 MEWNGLKMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MVMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQ
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 GFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB6 PLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSD
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB6 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ
300 310 320 330 340 350
370
pF1KB6 VSFKTNKAHKS
:::::::::::
CCDS44 VSFKTNKAHKS
360
>>CCDS44139.2 ELAVL4 gene_id:1996|Hs108|chr1 (402 aa)
initn: 2393 init1: 2393 opt: 2393 Z-score: 2018.3 bits: 382.2 E(32554): 4.2e-106
Smith-Waterman score: 2393; 100.0% identity (100.0% similar) in 364 aa overlap (8-371:39-402)
10 20 30
pF1KB6 MEWNGLKMIISTMEPQVSNGPTSNTSNGPSSNNRNCP
::::::::::::::::::::::::::::::
CCDS44 GCVHGGKGLTDMRLLLLREIVINESRNCSFMIISTMEPQVSNGPTSNTSNGPSSNNRNCP
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB6 SPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFV
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB6 NYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB6 SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANN
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB6 PSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVG
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB6 MNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMT
310 320 330 340 350 360
340 350 360 370
pF1KB6 NYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHKS
::::::::::::::::::::::::::::::::::
CCDS44 NYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHKS
370 380 390 400
>>CCDS44138.1 ELAVL4 gene_id:1996|Hs108|chr1 (366 aa)
initn: 2390 init1: 2390 opt: 2390 Z-score: 2016.3 bits: 381.7 E(32554): 5.5e-106
Smith-Waterman score: 2390; 99.2% identity (100.0% similar) in 366 aa overlap (6-371:1-366)
10 20 30 40 50 60
pF1KB6 MEWNGLKMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQ
...::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MEQIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQ
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 GFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB6 PLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSD
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB6 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ
300 310 320 330 340 350
370
pF1KB6 VSFKTNKAHKS
:::::::::::
CCDS44 VSFKTNKAHKS
360
>>CCDS53315.1 ELAVL4 gene_id:1996|Hs108|chr1 (369 aa)
initn: 2386 init1: 2386 opt: 2386 Z-score: 2012.9 bits: 381.1 E(32554): 8.5e-106
Smith-Waterman score: 2386; 100.0% identity (100.0% similar) in 363 aa overlap (9-371:7-369)
10 20 30 40 50 60
pF1KB6 MEWNGLKMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MRLKNQIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQ
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 GFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB6 PLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSD
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB6 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ
300 310 320 330 340 350
370
pF1KB6 VSFKTNKAHKS
:::::::::::
CCDS53 VSFKTNKAHKS
360
>>CCDS6515.1 ELAVL2 gene_id:1993|Hs108|chr9 (359 aa)
initn: 2504 init1: 2090 opt: 2157 Z-score: 1821.7 bits: 345.7 E(32554): 3.8e-95
Smith-Waterman score: 2157; 90.0% identity (97.5% similar) in 360 aa overlap (13-371:1-359)
10 20 30 40 50
pF1KB6 MEWNGLKMIISTMEPQVSNGPT-SNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLP
:: :.::::: .::.:::.. : :: ::...: .:.::::::::::::
CCDS65 METQLSNGPTCNNTANGPTTINNNCSSPVDSG-NTEDSKTNLIVNYLP
10 20 30 40
60 70 80 90 100 110
pF1KB6 QNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT
:::::::..:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 QNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB6 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
CCDS65 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRG
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB6 VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYP
:::::::::::::::::::::::: :::::::::::::::::..::.:::::::::::::
CCDS65 VGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYP
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB6 GPLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDS
::: .::::::::::::::::::::::.::::::::.:.::::: :::::::::::.::.
CCDS65 GPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDA
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB6 DESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL
:::.:::.:::::::.::::::::::::::::::::::::::::::::::::::::::::
CCDS65 DESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL
290 300 310 320 330 340
360 370
pF1KB6 QVSFKTNKAHKS
::::::::.::.
CCDS65 QVSFKTNKTHKA
350
>>CCDS45978.1 ELAVL3 gene_id:1995|Hs108|chr19 (360 aa)
initn: 2102 init1: 1387 opt: 1943 Z-score: 1642.8 bits: 312.6 E(32554): 3.5e-85
Smith-Waterman score: 1943; 82.2% identity (93.7% similar) in 365 aa overlap (9-371:5-360)
10 20 30 40 50
pF1KB6 MEWNGLKMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQ-TGATTDDSKTNLIVNYLP
:...:: ::..::. ::. : .:. :...::::::::::::::
CCDS45 MVTQILGAMESQVGGGPA-----GPALPN----GPLLGTNGATDDSKTNLIVNYLP
10 20 30 40
60 70 80 90 100 110
pF1KB6 QNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT
:::::.::.:::::::.::::::::::::::::::::::: ::.::.:::::::::.:::
CCDS45 QNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB6 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRG
:::::::::::::::::::::::::::::.:::.::::::::::::::::::::::::::
CCDS45 KTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRG
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB6 VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYP
:::::::::::::::::::::::: ::.::::::::::::::..::::..:::: :::
CCDS45 VGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYA
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB6 GPLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHT-GTGWCIFVYNLSPD
::::::.:::::::::::::::::::::.::::..:.:... : . :.:::::::::::.
CCDS45 GPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPE
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB6 SDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRV
.:::::::::::::::.::::::::.:::::::::::::::::::::::::::::::.::
CCDS45 ADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERV
290 300 310 320 330 340
360 370
pF1KB6 LQVSFKTNKAHKS
:::::::.: ::.
CCDS45 LQVSFKTSKQHKA
350 360
>>CCDS32912.1 ELAVL3 gene_id:1995|Hs108|chr19 (367 aa)
initn: 1898 init1: 1304 opt: 1919 Z-score: 1622.7 bits: 308.9 E(32554): 4.6e-84
Smith-Waterman score: 1919; 80.6% identity (91.9% similar) in 372 aa overlap (9-371:5-367)
10 20 30 40 50
pF1KB6 MEWNGLKMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQ-TGATTDDSKTNLIVNYLP
:...:: ::..::. ::. : .:. :...::::::::::::::
CCDS32 MVTQILGAMESQVGGGPA-----GPALPN----GPLLGTNGATDDSKTNLIVNYLP
10 20 30 40
60 70 80 90 100 110
pF1KB6 QNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT
:::::.::.:::::::.::::::::::::::::::::::: ::.::.:::::::::.:::
CCDS32 QNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB6 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRG
:::::::::::::::::::::::::::::.:::.::::::::::::::::::::::::::
CCDS32 KTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRG
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB6 VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYP
:::::::::::::::::::::::: ::.::::::::::::::..::::..:::: :::
CCDS32 VGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYA
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB6 GPLHHQAQRFRLDNLLNMAYGVK-------RFSPITIDGMTSLVGMNIPGHT-GTGWCIF
::::::.:::::::::::::::: :::::.::::..:.:... : . :.:::::
CCDS32 GPLHHQTQRFRLDNLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIF
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB6 VYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG
::::::..:::::::::::::::.::::::::.:::::::::::::::::::::::::::
CCDS32 VYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG
290 300 310 320 330 340
360 370
pF1KB6 YRLGDRVLQVSFKTNKAHKS
::::.:::::::::.: ::.
CCDS32 YRLGERVLQVSFKTSKQHKA
350 360
>>CCDS81321.1 ELAVL4 gene_id:1996|Hs108|chr1 (385 aa)
initn: 1925 init1: 1714 opt: 1714 Z-score: 1451.1 bits: 277.2 E(32554): 1.7e-74
Smith-Waterman score: 2409; 96.4% identity (96.4% similar) in 385 aa overlap (1-371:1-385)
10 20 30 40 50 60
pF1KB6 MEWNGLKMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MEWNGLKMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 GFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 GFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG
190 200 210 220 230 240
250 260 270 280
pF1KB6 PLHHQAQRFRLDNLLNMAYGVKR--------------FSPITIDGMTSLVGMNIPGHTGT
::::::::::::::::::::::: :::::::::::::::::::::::
CCDS81 PLHHQAQRFRLDNLLNMAYGVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGT
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB6 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI
310 320 330 340 350 360
350 360 370
pF1KB6 ASLNGYRLGDRVLQVSFKTNKAHKS
:::::::::::::::::::::::::
CCDS81 ASLNGYRLGDRVLQVSFKTNKAHKS
370 380
>>CCDS553.1 ELAVL4 gene_id:1996|Hs108|chr1 (380 aa)
initn: 1871 init1: 1660 opt: 1660 Z-score: 1406.0 bits: 268.9 E(32554): 5.4e-72
Smith-Waterman score: 2355; 96.3% identity (96.3% similar) in 378 aa overlap (8-371:3-380)
10 20 30 40 50 60
pF1KB6 MEWNGLKMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MVMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQ
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 GFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG
180 190 200 210 220 230
250 260 270 280
pF1KB6 PLHHQAQRFRLDNLLNMAYGVKR--------------FSPITIDGMTSLVGMNIPGHTGT
::::::::::::::::::::::: :::::::::::::::::::::::
CCDS55 PLHHQAQRFRLDNLLNMAYGVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGT
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB6 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI
300 310 320 330 340 350
350 360 370
pF1KB6 ASLNGYRLGDRVLQVSFKTNKAHKS
:::::::::::::::::::::::::
CCDS55 ASLNGYRLGDRVLQVSFKTNKAHKS
360 370 380
371 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:14:40 2016 done: Fri Nov 4 16:14:40 2016
Total Scan time: 2.030 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]