FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6498, 61 aa
  1>>>pF1KB6498 61 - 61 aa - 61 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0612+/-0.000767; mu= 4.3453+/- 0.046
 mean_var=150.2089+/-28.164, 0's: 0 Z-trim(115.3): 62  B-trim: 0 in 0/52
 Lambda= 0.104647
 statistics sampled from 15791 (15857) to 15791 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.794), E-opt: 0.2 (0.487), width:  16
 Scan time:  0.980

The best scores are:                                      opt bits E(32554)
CCDS10763.1 MT2A gene_id:4502|Hs108|chr16          (  61)  514 86.9 8.3e-19
CCDS10764.2 MT1E gene_id:4493|Hs108|chr16          (  61)  493 83.7 7.5e-18
CCDS10766.1 MT1G gene_id:4495|Hs108|chr16          (  61)  488 83.0 1.3e-17
CCDS32456.1 MT1F gene_id:4494|Hs108|chr16          (  61)  486 82.7 1.6e-17
CCDS10767.1 MT1H gene_id:4496|Hs108|chr16          (  61)  479 81.6 3.2e-17
CCDS32454.1 MT1A gene_id:4489|Hs108|chr16          (  61)  477 81.3   4e-17
CCDS76873.1 MT1G gene_id:4495|Hs108|chr16          (  62)  476 81.2 4.5e-17
CCDS10768.1 MT1X gene_id:4501|Hs108|chr16          (  61)  473 80.7 6.1e-17
CCDS10765.1 MT1B gene_id:4490|Hs108|chr16          (  61)  467 79.8 1.1e-16
CCDS31068.1 MT1HL1 gene_id:645745|Hs108|chr1       (  61)  452 77.6 5.5e-16
CCDS42166.1 MT1M gene_id:4499|Hs108|chr16          (  61)  443 76.2 1.4e-15
CCDS10762.1 MT3 gene_id:4504|Hs108|chr16           (  68)  368 64.9 3.8e-12
CCDS42165.1 MT4 gene_id:84560|Hs108|chr16          (  62)  353 62.6 1.7e-11


>>CCDS10763.1 MT2A gene_id:4502|Hs108|chr16               (61 aa)
 initn: 514 init1: 514 opt: 514  Z-score: 451.1  bits: 86.9 E(32554): 8.3e-19
Smith-Waterman score: 514; 100.0% identity (100.0% similar) in 61 aa overlap (1-61:1-61)

               10        20        30        40        50        60
pF1KB6 MDPNCSCAAGDSCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASDKCSCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MDPNCSCAAGDSCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASDKCSCC
               10        20        30        40        50        60

        
pF1KB6 A
       :
CCDS10 A
        

>>CCDS10764.2 MT1E gene_id:4493|Hs108|chr16               (61 aa)
 initn: 493 init1: 493 opt: 493  Z-score: 434.0  bits: 83.7 E(32554): 7.5e-18
Smith-Waterman score: 493; 93.4% identity (98.4% similar) in 61 aa overlap (1-61:1-61)

               10        20        30        40        50        60
pF1KB6 MDPNCSCAAGDSCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASDKCSCC
       ::::::::.: :::::::::::::::::::::::::::::::::::::.:::::.:::::
CCDS10 MDPNCSCATGGSCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCVCKGASEKCSCC
               10        20        30        40        50        60

        
pF1KB6 A
       :
CCDS10 A
        

>>CCDS10766.1 MT1G gene_id:4495|Hs108|chr16               (61 aa)
 initn: 488 init1: 488 opt: 488  Z-score: 429.9  bits: 83.0 E(32554): 1.3e-17
Smith-Waterman score: 488; 95.1% identity (98.4% similar) in 61 aa overlap (1-61:1-61)

               10        20        30        40        50        60
pF1KB6 MDPNCSCAAGDSCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASDKCSCC
       :::::::::: :::::.:::::::::::::::::::::::::::::::::::::.:::::
CCDS10 MDPNCSCAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSCC
               10        20        30        40        50        60

        
pF1KB6 A
       :
CCDS10 A
        

>>CCDS32456.1 MT1F gene_id:4494|Hs108|chr16               (61 aa)
 initn: 486 init1: 486 opt: 486  Z-score: 428.3  bits: 82.7 E(32554): 1.6e-17
Smith-Waterman score: 486; 93.3% identity (98.3% similar) in 60 aa overlap (1-60:1-60)

               10        20        30        40        50        60
pF1KB6 MDPNCSCAAGDSCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASDKCSCC
       :::::::::: ::::::::::::::::::::::::::::::.::::::.:::::.:::::
CCDS32 MDPNCSCAAGVSCTCAGSCKCKECKCTSCKKSCCSCCPVGCSKCAQGCVCKGASEKCSCC
               10        20        30        40        50        60

        
pF1KB6 A
        
CCDS32 D
        

>>CCDS10767.1 MT1H gene_id:4496|Hs108|chr16               (61 aa)
 initn: 479 init1: 479 opt: 479  Z-score: 422.6  bits: 81.6 E(32554): 3.2e-17
Smith-Waterman score: 479; 90.2% identity (96.7% similar) in 61 aa overlap (1-61:1-61)

               10        20        30        40        50        60
pF1KB6 MDPNCSCAAGDSCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASDKCSCC
       ::::::: :: ::.::::::::.:::::::::::::::.:::::::::::::::.:::::
CCDS10 MDPNCSCEAGGSCACAGSCKCKKCKCTSCKKSCCSCCPLGCAKCAQGCICKGASEKCSCC
               10        20        30        40        50        60

        
pF1KB6 A
       :
CCDS10 A
        

>>CCDS32454.1 MT1A gene_id:4489|Hs108|chr16               (61 aa)
 initn: 477 init1: 477 opt: 477  Z-score: 420.9  bits: 81.3 E(32554): 4e-17
Smith-Waterman score: 477; 90.2% identity (98.4% similar) in 61 aa overlap (1-61:1-61)

               10        20        30        40        50        60
pF1KB6 MDPNCSCAAGDSCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASDKCSCC
       ::::::::.: ::::.::::::::::::::::::::::..::::::::::::::.:::::
CCDS32 MDPNCSCATGGSCTCTGSCKCKECKCTSCKKSCCSCCPMSCAKCAQGCICKGASEKCSCC
               10        20        30        40        50        60

        
pF1KB6 A
       :
CCDS32 A
        

>>CCDS76873.1 MT1G gene_id:4495|Hs108|chr16               (62 aa)
 initn: 425 init1: 425 opt: 476  Z-score: 420.0  bits: 81.2 E(32554): 4.5e-17
Smith-Waterman score: 476; 93.5% identity (96.8% similar) in 62 aa overlap (1-61:1-62)

                10        20        30        40        50         
pF1KB6 MDPNCSCAA-GDSCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASDKCSC
       ::::::::: : :::::.:::::::::::::::::::::::::::::::::::::.::::
CCDS76 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
               10        20        30        40        50        60

      60 
pF1KB6 CA
       ::
CCDS76 CA
         

>>CCDS10768.1 MT1X gene_id:4501|Hs108|chr16               (61 aa)
 initn: 473 init1: 473 opt: 473  Z-score: 417.7  bits: 80.7 E(32554): 6.1e-17
Smith-Waterman score: 473; 90.2% identity (95.1% similar) in 61 aa overlap (1-61:1-61)

               10        20        30        40        50        60
pF1KB6 MDPNCSCAAGDSCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASDKCSCC
       :::::::.   ::.::::::::::::::::::::::::::::::::::::::.:::::::
CCDS10 MDPNCSCSPVGSCACAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGTSDKCSCC
               10        20        30        40        50        60

        
pF1KB6 A
       :
CCDS10 A
        

>>CCDS10765.1 MT1B gene_id:4490|Hs108|chr16               (61 aa)
 initn: 467 init1: 467 opt: 467  Z-score: 412.8  bits: 79.8 E(32554): 1.1e-16
Smith-Waterman score: 467; 85.2% identity (95.1% similar) in 61 aa overlap (1-61:1-61)

               10        20        30        40        50        60
pF1KB6 MDPNCSCAAGDSCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASDKCSCC
       :::::::..: ::.::::::::::::::::: ::::::::::::::::.:::.:.:: ::
CCDS10 MDPNCSCTTGGSCACAGSCKCKECKCTSCKKCCCSCCPVGCAKCAQGCVCKGSSEKCRCC
               10        20        30        40        50        60

        
pF1KB6 A
       :
CCDS10 A
        

>>CCDS31068.1 MT1HL1 gene_id:645745|Hs108|chr1            (61 aa)
 initn: 452 init1: 452 opt: 452  Z-score: 400.5  bits: 77.6 E(32554): 5.5e-16
Smith-Waterman score: 452; 88.5% identity (95.1% similar) in 61 aa overlap (1-61:1-61)

               10        20        30        40        50        60
pF1KB6 MDPNCSCAAGDSCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASDKCSCC
       :::::::::: : .::::::::.:::::::::::::::.:::::::::: ::::.:::::
CCDS31 MDPNCSCAAGGSYACAGSCKCKKCKCTSCKKSCCSCCPLGCAKCAQGCIRKGASEKCSCC
               10        20        30        40        50        60

        
pF1KB6 A
       :
CCDS31 A
        




61 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 01:00:10 2016 done: Sat Nov  5 01:00:11 2016
 Total Scan time:  0.980 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]