FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6492, 357 aa
  1>>>pF1KB6492 357 - 357 aa - 357 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9791+/-0.000868; mu= 9.2129+/- 0.052
 mean_var=125.5488+/-25.180, 0's: 0 Z-trim(110.6): 15  B-trim: 471 in 1/51
 Lambda= 0.114464
 statistics sampled from 11701 (11705) to 11701 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.36), width:  16
 Scan time:  2.230

The best scores are:                                      opt bits E(32554)
CCDS3371.1 LRPAP1 gene_id:4043|Hs108|chr4          ( 357) 2351 399.2 2.8e-111


>>CCDS3371.1 LRPAP1 gene_id:4043|Hs108|chr4               (357 aa)
 initn: 2351 init1: 2351 opt: 2351  Z-score: 2111.3  bits: 399.2 E(32554): 2.8e-111
Smith-Waterman score: 2351; 100.0% identity (100.0% similar) in 357 aa overlap (1-357:1-357)

               10        20        30        40        50        60
pF1KB6 MAPRRVRSFLRGLPALLLLLLFLGPWPAASHGGKYSREKNQPKPSPKRESGEEFRMEKLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAPRRVRSFLRGLPALLLLLLFLGPWPAASHGGKYSREKNQPKPSPKRESGEEFRMEKLN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QLWEKAQRLHLPPVRLAELHADLKIQERDELAWKKLKLDGLDEDGEKEARLIRNLNVILA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QLWEKAQRLHLPPVRLAELHADLKIQERDELAWKKLKLDGLDEDGEKEARLIRNLNVILA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KYGLDGKKDARQVTSNSLSGTQEDGLDDPRLEKLWHKAKTSGKFSGEELDKLWREFLHHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KYGLDGKKDARQVTSNSLSGTQEDGLDDPRLEKLWHKAKTSGKFSGEELDKLWREFLHHK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 EKVHEYNVLLETLSRTEEIHENVISPSDLSDIKGSVLHSRHTELKEKLRSINQGLDRLRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EKVHEYNVLLETLSRTEEIHENVISPSDLSDIKGSVLHSRHTELKEKLRSINQGLDRLRR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 VSHQGYSTEAEFEEPRVIDLWDLAQSANLTDKELEAFREELKHFEAKIEKHNHYQKQLEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VSHQGYSTEAEFEEPRVIDLWDLAQSANLTDKELEAFREELKHFEAKIEKHNHYQKQLEI
              250       260       270       280       290       300

              310       320       330       340       350       
pF1KB6 AHEKLRHAESVGDGERVSRSREKHALLEGRTKELGYTVKKHLQDLSGRISRARHNEL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AHEKLRHAESVGDGERVSRSREKHALLEGRTKELGYTVKKHLQDLSGRISRARHNEL
              310       320       330       340       350       




357 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:09:38 2016 done: Fri Nov  4 23:09:39 2016
 Total Scan time:  2.230 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]